Why do nucleosomes unwrap asymmetrically?

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Lennart De Bruin - , Leiden University (Author)
  • Marco Tompitak - , Leiden University (Author)
  • Behrouz Eslami-Mossallam - , Leiden University, Delft University of Technology (Author)
  • Helmut Schiessel - , Leiden University (Author)

Abstract

Nucleosomes, DNA spools with a protein core, engage about three-quarters of eukaryotic DNA and play a critical role in chromosomal processes, ranging from gene regulation, recombination, and replication to chromosome condensation. For more than a decade, micromanipulation experiments where nucleosomes are put under tension, as well as the theoretical interpretations of these experiments, have deepened our understanding of the stability and dynamics of nucleosomes. Here we give a theoretical explanation for a surprising new experimental finding: nucleosomes wrapped onto the 601 positioning sequence (the sequence used in most laboratories) respond highly asymmetrically to external forces by always unwrapping from the same end. Using a computational nucleosome model, we show that this asymmetry can be explained by differences in the DNA mechanics of two very short stretches on the wrapped DNA portion. Our finding suggests that the physical properties of nucleosomes, here the response to forces, can be tuned locally by the choice of the underlying base-pair sequence. This leads to a new view of nucleosomes: a physically highly varied set of DNA-protein complexes whose properties can be tuned on evolutionary time scales to their specific function in the genomic context.

Details

Original languageEnglish
Pages (from-to)5855-5863
Number of pages9
JournalJournal of Physical Chemistry B
Volume120
Issue number26
Publication statusPublished - 7 Jul 2016
Peer-reviewedYes
Externally publishedYes

External IDs

PubMed 26991771