Why do nucleosomes unwrap asymmetrically?

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • Lennart De Bruin - , Leiden University (Autor:in)
  • Marco Tompitak - , Leiden University (Autor:in)
  • Behrouz Eslami-Mossallam - , Leiden University, Technische Universität Delft (Autor:in)
  • Helmut Schiessel - , Leiden University (Autor:in)

Abstract

Nucleosomes, DNA spools with a protein core, engage about three-quarters of eukaryotic DNA and play a critical role in chromosomal processes, ranging from gene regulation, recombination, and replication to chromosome condensation. For more than a decade, micromanipulation experiments where nucleosomes are put under tension, as well as the theoretical interpretations of these experiments, have deepened our understanding of the stability and dynamics of nucleosomes. Here we give a theoretical explanation for a surprising new experimental finding: nucleosomes wrapped onto the 601 positioning sequence (the sequence used in most laboratories) respond highly asymmetrically to external forces by always unwrapping from the same end. Using a computational nucleosome model, we show that this asymmetry can be explained by differences in the DNA mechanics of two very short stretches on the wrapped DNA portion. Our finding suggests that the physical properties of nucleosomes, here the response to forces, can be tuned locally by the choice of the underlying base-pair sequence. This leads to a new view of nucleosomes: a physically highly varied set of DNA-protein complexes whose properties can be tuned on evolutionary time scales to their specific function in the genomic context.

Details

OriginalspracheEnglisch
Seiten (von - bis)5855-5863
Seitenumfang9
FachzeitschriftJournal of Physical Chemistry B
Jahrgang120
Ausgabenummer26
PublikationsstatusVeröffentlicht - 7 Juli 2016
Peer-Review-StatusJa
Extern publiziertJa

Externe IDs

PubMed 26991771