Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples
Research output: Contribution to journal › Research article › Contributed › peer-review
Contributors
Abstract
Surveillance of antibiotic resistance genes (ARGs) has been increasingly conducted in environmental sectors to complement the surveys in human and animal sectors under the "One-Health"framework. However, there are substantial challenges in comparing and synthesizing the results of multiple studies that employ different test methods and approaches in bioinformatic analysis. In this article, we consider the commonly used quantification units (ARG copy per cell, ARG copy per genome, ARG density, ARG copy per 16S rRNA gene, RPKM, coverage, PPM, etc.) for profiling ARGs and suggest a universal unit (ARG copy per cell) for reporting such biological measurements of samples and improving the comparability of different surveillance efforts.
Details
Original language | English |
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Pages (from-to) | 9713–9721 |
Number of pages | 9 |
Journal | Environmental Science and Technology |
Volume | 57 |
Issue number | 26 |
Early online date | 13 Jun 2023 |
Publication status | Published - 4 Jul 2023 |
Peer-reviewed | Yes |
External IDs
PubMed | 37310875 |
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WOS | 001008704300001 |
ORCID | /0000-0002-9301-1803/work/161409833 |
Keywords
Sustainable Development Goals
ASJC Scopus subject areas
Keywords
- ARG copy per cell, long-read sequencing, metagenomics, one-health, standardization, Metagenomics, One-health, Standardization, Long-read sequencing, Genes, Bacterial, Humans, RNA, Ribosomal, 16S/genetics, Anti-Bacterial Agents/pharmacology, Metagenomics/methods, Animals, Drug Resistance, Microbial/genetics