Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • Xiaole Yin - , The University of Hong Kong (Autor:in)
  • Xi Chen - , The University of Hong Kong (Autor:in)
  • Xiao Tao Jiang - , University of New South Wales (Autor:in)
  • Ying Yang - , Sun Yat-Sen University (Autor:in)
  • Bing Li - , Tsinghua University (Autor:in)
  • Marcus Ho Hin Shum - , The University of Hong Kong (Autor:in)
  • Tommy T.Y. Lam - , The University of Hong Kong (Autor:in)
  • Gabriel M. Leung - , The University of Hong Kong (Autor:in)
  • Joan Rose - , Michigan State University (Autor:in)
  • Concepcion Sanchez-Cid - , Universite Claude Bernard Lyon 1 (Autor:in)
  • Timothy M. Vogel - , Universite Claude Bernard Lyon 1 (Autor:in)
  • Fiona Walsh - , National University of Ireland Maynooth (Autor:in)
  • Thomas U. Berendonk - , Professur für Limnologie (Gewässerökologie) (Autor:in)
  • Janet Midega - , Wellcome Trust (Autor:in)
  • Chibuzor Uchea - , Wellcome Trust (Autor:in)
  • Dominic Frigon - , McGill University (Autor:in)
  • Gerard D. Wright - , McMaster University (Autor:in)
  • Carlos Bezuidenhout - , North West University (Autor:in)
  • Renata C. Picão - , Universidade Federal do Rio de Janeiro (Autor:in)
  • Shaikh Z. Ahammad - , Indian Institute of Technology Delhi (IITD) (Autor:in)
  • Per Halkjær Nielsen - , Aalborg University (Autor:in)
  • Philip Hugenholtz - , University of Queensland (Autor:in)
  • Nicholas J. Ashbolt - , Southern Cross University (Autor:in)
  • Gianluca Corno - , National Research Council of Italy (CNR) (Autor:in)
  • Despo Fatta-Kassinos - , University of Cyprus (Autor:in)
  • Helmut Bürgmann - , Eawag - das Wasserforschungsinstitut des ETH-Bereichs (Autor:in)
  • Heike Schmitt - , National Institute of Public Health and the Environment, Technische Universität Delft (Autor:in)
  • Chang Jun Cha - , Chung-Ang University (Autor:in)
  • Amy Pruden - , Virginia Polytechnic Institute and State University (Autor:in)
  • Kornelia Smalla - , Julius Kühn Institute - Federal Research Centre for Cultivated Plants (Autor:in)
  • Eddie Cytryn - , Agricultural Research Organization of Israel (Autor:in)
  • Yu Zhang - , CAS - Research Center for Eco-Environmental Sciences (Autor:in)
  • Min Yang - , CAS - Research Center for Eco-Environmental Sciences (Autor:in)
  • Yong Guan Zhu - , CAS - Chinese Academy of Sciences (Autor:in)
  • Arnaud Dechesne - , Technical University of Denmark (Autor:in)
  • Barth F. Smets - , Technical University of Denmark (Autor:in)
  • David W. Graham - , Newcastle University (Autor:in)
  • Michael R. Gillings - , Macquarie University (Autor:in)
  • William H. Gaze - , University of Exeter (Autor:in)
  • Célia M. Manaia - , Universidade Católica Portuguesa (Autor:in)
  • Mark C.M. Van Loosdrecht - , Technische Universität Delft (Autor:in)
  • Pedro J.J. Alvarez - , Rice University (Autor:in)
  • Martin J. Blaser - , Rutgers - The State University of New Jersey, New Brunswick (Autor:in)
  • James M. Tiedje - , Michigan State University (Autor:in)
  • Edward Topp - , Agriculture and Agri-Food Canada (Autor:in)
  • Tong Zhang - , The University of Hong Kong (Autor:in)

Abstract

Surveillance of antibiotic resistance genes (ARGs) has been increasingly conducted in environmental sectors to complement the surveys in human and animal sectors under the "One-Health"framework. However, there are substantial challenges in comparing and synthesizing the results of multiple studies that employ different test methods and approaches in bioinformatic analysis. In this article, we consider the commonly used quantification units (ARG copy per cell, ARG copy per genome, ARG density, ARG copy per 16S rRNA gene, RPKM, coverage, PPM, etc.) for profiling ARGs and suggest a universal unit (ARG copy per cell) for reporting such biological measurements of samples and improving the comparability of different surveillance efforts.

Details

OriginalspracheEnglisch
Seiten (von - bis)9713–9721
Seitenumfang9
FachzeitschriftEnvironmental Science and Technology
Jahrgang57
Ausgabenummer26
Frühes Online-Datum13 Juni 2023
PublikationsstatusVeröffentlicht - 4 Juli 2023
Peer-Review-StatusJa

Externe IDs

PubMed 37310875
WOS 001008704300001
ORCID /0000-0002-9301-1803/work/161409833

Schlagworte

Ziele für nachhaltige Entwicklung

ASJC Scopus Sachgebiete

Schlagwörter

  • ARG copy per cell, long-read sequencing, metagenomics, one-health, standardization, Metagenomics, One-health, Standardization, Long-read sequencing, Genes, Bacterial, Humans, RNA, Ribosomal, 16S/genetics, Anti-Bacterial Agents/pharmacology, Metagenomics/methods, Animals, Drug Resistance, Microbial/genetics