Objective comparison of particle tracking methods

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Nicolas Chenouard - , French National Centre for Scientific Research (CNRS), Swiss Federal Institute of Technology Lausanne (EPFL), New York University (Author)
  • Ihor Smal - , Erasmus University Rotterdam (Author)
  • Fabrice De Chaumont - , French National Centre for Scientific Research (CNRS) (Author)
  • Martin Maška - , University of Navarra, Masaryk University (Author)
  • Ivo F. Sbalzarini - , Chair of Scientific Computing for Systems Biology, Max Planck Institute of Molecular Cell Biology and Genetics, Center for Systems Biology Dresden (CSBD) (Author)
  • Yuanhao Gong - , Max Planck Institute of Molecular Cell Biology and Genetics (Author)
  • Janick Cardinale - , Max Planck Institute of Molecular Cell Biology and Genetics (Author)
  • Craig Carthel - , Compunetix, Inc. (Author)
  • Stefano Coraluppi - , Compunetix, Inc. (Author)
  • Mark Winter - , Drexel University College of Engineering (Author)
  • Andrew R. Cohen - , Drexel University College of Engineering (Author)
  • William J. Godinez - , Heidelberg University , German Cancer Research Center (DKFZ) (Author)
  • Karl Rohr - , Heidelberg University , German Cancer Research Center (DKFZ) (Author)
  • Yannis Kalaidzidis - , Max Planck Institute of Molecular Cell Biology and Genetics, Lomonosov Moscow State University (Author)
  • Liang Liang - , Yale University (Author)
  • James Duncan - , Yale University (Author)
  • Hongying Shen - , Yale University (Author)
  • Yingke Xu - , Zhejiang University (Author)
  • Klas E.G. Magnusson - , KTH Royal Institute of Technology (Author)
  • Joakim Jaldén - , KTH Royal Institute of Technology (Author)
  • Helen M. Blau - , Stanford University (Author)
  • Perrine Paul-Gilloteaux - , Institut Curie (Author)
  • Philippe Roudot - , INRIA - Institut national de recherche en informatique et en automatique (Author)
  • Charles Kervrann - , INRIA - Institut national de recherche en informatique et en automatique (Author)
  • François Waharte - , Institut Curie (Author)
  • Jean Yves Tinevez - , Institut Pasteur Paris (Author)
  • Spencer L. Shorte - , Institut Pasteur Paris (Author)
  • Joost Willemse - , Leiden University (Author)
  • Katherine Celler - , Leiden University (Author)
  • Gilles P. Van Wezel - , Leiden University (Author)
  • Han Wei Dan - , Chung Yuan Christian University (Author)
  • Yuh Show Tsai - , Chung Yuan Christian University (Author)
  • Carlos Ortiz De Solórzano - , University of Navarra (Author)
  • Jean Christophe Olivo-Marin - , French National Centre for Scientific Research (CNRS) (Author)
  • Erik Meijering - , Erasmus University Rotterdam (Author)

Abstract

Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tasks by many groups. Aiming to perform an objective comparison of methods, we gathered the community and organized an open competition in which participating teams applied their own methods independently to a commonly defined data set including diverse scenarios. Performance was assessed using commonly defined measures. Although no single method performed best across all scenarios, the results revealed clear differences between the various approaches, leading to notable practical conclusions for users and developers.

Details

Original languageEnglish
Pages (from-to)281-289
Number of pages9
JournalNature methods
Volume11
Issue number3
Publication statusPublished - Mar 2014
Peer-reviewedYes

External IDs

PubMed 24441936
ORCID /0000-0003-4414-4340/work/159608281