Objective comparison of particle tracking methods

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • Nicolas Chenouard - , Centre national de la recherche scientifique (CNRS), École Polytechnique Fédérale de Lausanne, New York University (Autor:in)
  • Ihor Smal - , Erasmus University Rotterdam (Autor:in)
  • Fabrice De Chaumont - , Centre national de la recherche scientifique (CNRS) (Autor:in)
  • Martin Maška - , Universidad de Navarra, Masaryk University (Autor:in)
  • Ivo F. Sbalzarini - , Professur für Wissenschaftliches Rechnen für Systembiologie, Max Planck Institute of Molecular Cell Biology and Genetics, Zentrum für Systembiologie Dresden (CSBD) (Autor:in)
  • Yuanhao Gong - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Janick Cardinale - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Craig Carthel - , Compunetix, Inc. (Autor:in)
  • Stefano Coraluppi - , Compunetix, Inc. (Autor:in)
  • Mark Winter - , Drexel University College of Engineering (Autor:in)
  • Andrew R. Cohen - , Drexel University College of Engineering (Autor:in)
  • William J. Godinez - , Universität Heidelberg, Deutsches Krebsforschungszentrum (DKFZ) (Autor:in)
  • Karl Rohr - , Universität Heidelberg, Deutsches Krebsforschungszentrum (DKFZ) (Autor:in)
  • Yannis Kalaidzidis - , Max Planck Institute of Molecular Cell Biology and Genetics, Lomonosov Moscow State University (Autor:in)
  • Liang Liang - , Yale University (Autor:in)
  • James Duncan - , Yale University (Autor:in)
  • Hongying Shen - , Yale University (Autor:in)
  • Yingke Xu - , Zhejiang University (Autor:in)
  • Klas E.G. Magnusson - , KTH Royal Institute of Technology (Autor:in)
  • Joakim Jaldén - , KTH Royal Institute of Technology (Autor:in)
  • Helen M. Blau - , Stanford University (Autor:in)
  • Perrine Paul-Gilloteaux - , Institut Curie (Autor:in)
  • Philippe Roudot - , INRIA - Institut national de recherche en informatique et en automatique (Autor:in)
  • Charles Kervrann - , INRIA - Institut national de recherche en informatique et en automatique (Autor:in)
  • François Waharte - , Institut Curie (Autor:in)
  • Jean Yves Tinevez - , Institut Pasteur Paris (Autor:in)
  • Spencer L. Shorte - , Institut Pasteur Paris (Autor:in)
  • Joost Willemse - , Leiden University (Autor:in)
  • Katherine Celler - , Leiden University (Autor:in)
  • Gilles P. Van Wezel - , Leiden University (Autor:in)
  • Han Wei Dan - , Chung Yuan Christian University (Autor:in)
  • Yuh Show Tsai - , Chung Yuan Christian University (Autor:in)
  • Carlos Ortiz De Solórzano - , Universidad de Navarra (Autor:in)
  • Jean Christophe Olivo-Marin - , Centre national de la recherche scientifique (CNRS) (Autor:in)
  • Erik Meijering - , Erasmus University Rotterdam (Autor:in)

Abstract

Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tasks by many groups. Aiming to perform an objective comparison of methods, we gathered the community and organized an open competition in which participating teams applied their own methods independently to a commonly defined data set including diverse scenarios. Performance was assessed using commonly defined measures. Although no single method performed best across all scenarios, the results revealed clear differences between the various approaches, leading to notable practical conclusions for users and developers.

Details

OriginalspracheEnglisch
Seiten (von - bis)281-289
Seitenumfang9
FachzeitschriftNature methods
Jahrgang11
Ausgabenummer3
PublikationsstatusVeröffentlicht - März 2014
Peer-Review-StatusJa

Externe IDs

PubMed 24441936
ORCID /0000-0003-4414-4340/work/159608281

Schlagworte