Model evaluation for glycolytic oscillations in yeast biotransformations of xenobiotics

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • L Brusch - , National Institute of Applied Sciences of Toulouse (INSA), Max-Planck-Institute for the Physics of Complex Systems (Author)
  • G Cuniberti - , Max-Planck-Institute for the Physics of Complex Systems, University of Regensburg (Author)
  • Martin Bertau - , TUD Dresden University of Technology (Author)

Abstract

Anaerobic glycolysis in yeast perturbed by the reduction of xenobiotic ketones is studied numerically in two models which possess the same topology but different levels of complexity. By comparing both models' predictions for concentrations and fluxes as well as steady or oscillatory temporal behavior we answer the question what phenomena require what kind of minimum model abstraction. While mean concentrations and fluxes are predicted in agreement by both models we observe different domains of oscillatory behavior in parameter space. Generic properties of the glycolytic response to ketones are discussed. (C) 2003 Elsevier B.V. All rights reserved.

Details

Original languageEnglish
Pages (from-to)413-426
Number of pages14
JournalBiophysical chemistry
Volume109
Issue number3
Publication statusPublished - 1 Jun 2004
Peer-reviewedYes
Externally publishedYes

External IDs

Scopus 1942508726
ORCID /0000-0003-0137-5106/work/142244242

Keywords

Keywords

  • glycolysis, metabolic oscillations, model, biotransformation, BAKERS-YEAST, SACCHAROMYCES-CEREVISIAE, REDUCTION, DYNAMICS, CALCIUM, ESTERS, NETWORKS, ENZYMES