Learning formal definitions for biomedical concepts
Research output: Contribution to book/Conference proceedings/Anthology/Report › Conference contribution › Contributed › peer-review
Contributors
Abstract
Ontologies such as the SNOMED Clinical Terms (SNOMED CT), and the Medical Subject Headings (MeSH) play a major role in life sciences. Modeling formally the concepts and the roles in this domain is a crucial process to allow for the integration of biomedical knowledge across applications. In this direction we propose a novel methodology to learn formal definitions for biomedical concepts from unstructured text. We evaluate experimentally the suggested methodology in learning formal definitions of SNOMED CT concepts, using their text definitions from MeSH. The evaluation is focused on the learning of three roles which are among the most populated roles in SNOMED CT: Associated Morphology, Finding Site and Causative Agent. Results show that our methodology may provide an Accuracy of up to 75%. For the representation of the instances three main approaches are suggested, namely, Bag of Words, word n-grams and character n-grams.
Details
| Original language | English |
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| Title of host publication | OWLED 2013 - OWL: Experiences and Directions Workshop 2013 |
| Editors | Mariano Rodriguez-Muro, Simon Jupp, Kavitha Srinivas |
| Volume | 1080 |
| Publication status | Published - 2013 |
| Peer-reviewed | Yes |
Publication series
| Series | CEUR Workshop Proceedings |
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| Volume | 1080 |
| ISSN | 1613-0073 |
Conference
| Title | 10th International Workshop on OWL: Experiences and Directions, OWLED 2013 - Co-located with 10th Extended Semantic Web Conference, ESWC 2013 |
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| Duration | 26 - 27 May 2013 |
| City | Montpellier |
| Country | France |
External IDs
| ORCID | /0000-0003-2848-6949/work/141543342 |
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| ORCID | /0000-0002-4049-221X/work/142247965 |