ISWI catalyzes nucleosome sliding in condensed nucleosome arrays

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Petra Vizjak - , Institute of Physiological Chemistry, Ludwig Maximilian University of Munich (First author)
  • Dieter Kamp - , Ludwig Maximilian University of Munich (Author)
  • Nicola Hepp - , Copenhagen University Hospitals, Institut für Physiologische Chemie (Author)
  • Alessandro Scacchetti - , University of Pennsylvania Perelman School of Medicine (Author)
  • Mariano Gonzalez Pisfil - , Ludwig Maximilian University of Munich (Author)
  • Joseph Bartho - , European Molecular Biology Laboratory (EMBL) Heidelberg (Author)
  • Mario Halic - , St. Jude Children Research Hospital (Author)
  • Peter B Becker - , Ludwig Maximilian University of Munich (Author)
  • Michaela Smolle - , ViraTherapeutics GmbH (Author)
  • Johannes Stigler - , Ludwig Maximilian University of Munich (Joint last author)
  • Felix Mueller-Planitz - , Institute of Physiological Chemistry (Joint last author)

Abstract

How chromatin enzymes work in condensed chromatin and how they maintain diffusional mobility inside remains unexplored. Here we investigated these challenges using the Drosophila ISWI remodeling ATPase, which slides nucleosomes along DNA. Folding of chromatin fibers did not affect sliding in vitro. Catalytic rates were also comparable in- and outside of chromatin condensates. ISWI cross-links and thereby stiffens condensates, except when ATP hydrolysis is possible. Active hydrolysis is also required for ISWI's mobility in condensates. Energy from ATP hydrolysis therefore fuels ISWI's diffusion through chromatin and prevents ISWI from cross-linking chromatin. Molecular dynamics simulations of a 'monkey-bar' model in which ISWI grabs onto neighboring nucleosomes, then withdraws from one before rebinding another in an ATP hydrolysis-dependent manner, qualitatively agree with our data. We speculate that monkey-bar mechanisms could be shared with other chromatin factors and that changes in chromatin dynamics caused by mutations in remodelers could contribute to pathologies.

Details

Original languageEnglish
Pages (from-to)1331-1340
Number of pages10
JournalNature structural & molecular biology
Volume31
Issue number9
Publication statusPublished - Sept 2024
Peer-reviewedYes

External IDs

Scopus 85191496096

Keywords

Keywords

  • Nucleosomes/metabolism, Animals, Adenosine Triphosphatases/metabolism, Molecular Dynamics Simulation, Transcription Factors/metabolism, Chromatin Assembly and Disassembly, Adenosine Triphosphate/metabolism, Drosophila melanogaster/metabolism, Hydrolysis, Drosophila Proteins/metabolism, DNA/metabolism, Chromatin/metabolism, Drosophila/metabolism