Hydration change on complexation of aromatic ligands with DNA: Molecular dynamics simulations
Research output: Contribution to journal › Research article › Contributed › peer-review
Contributors
Abstract
Aim. Analysis of the hydration changes at formation of DNA complexes with biologically active aromatic compounds (BAC): antibiotics actinomycin D, daunomycin, nogalamycin, novantrone and mutagens ethidium bromide and proflavine. Methods. Molecular dynamics simulations. Results. The hydration indexes for double-helical DNA and ligands in a free and complexed states were calculated. A critical analysis of modern ideas about changing water environment at binding of aromatic ligands to DNA was performed. Conclusions. It is shown that upon binding of aromatic BAC with DNA a significant (from 2.6 for novantrone to 13.1 for actinomycin D) liberation of water molecules out of hydration shells with the disruption of hydrogen bonds takes place.
Details
Original language | English |
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Pages (from-to) | 36-44 |
Number of pages | 9 |
Journal | Biopolymers & cell |
Volume | 26 |
Issue number | 1 |
Publication status | Published - 2010 |
Peer-reviewed | Yes |
External IDs
ORCID | /0000-0002-2335-0260/work/142246472 |
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Keywords
ASJC Scopus subject areas
Keywords
- Aromatic ligand, Double-helical DNA, Hydration index, Water release