Hydration change on complexation of aromatic ligands with DNA: Molecular dynamics simulations

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

Abstract

Aim. Analysis of the hydration changes at formation of DNA complexes with biologically active aromatic compounds (BAC): antibiotics actinomycin D, daunomycin, nogalamycin, novantrone and mutagens ethidium bromide and proflavine. Methods. Molecular dynamics simulations. Results. The hydration indexes for double-helical DNA and ligands in a free and complexed states were calculated. A critical analysis of modern ideas about changing water environment at binding of aromatic ligands to DNA was performed. Conclusions. It is shown that upon binding of aromatic BAC with DNA a significant (from 2.6 for novantrone to 13.1 for actinomycin D) liberation of water molecules out of hydration shells with the disruption of hydrogen bonds takes place.

Details

OriginalspracheEnglisch
Seiten (von - bis)36-44
Seitenumfang9
FachzeitschriftBiopolymers & cell
Jahrgang26
Ausgabenummer1
PublikationsstatusVeröffentlicht - 2010
Peer-Review-StatusJa

Externe IDs

ORCID /0000-0002-2335-0260/work/142246472

Schlagworte

Schlagwörter

  • Aromatic ligand, Double-helical DNA, Hydration index, Water release