Genotyping-by-sequencing-based high-resolution mapping reveals a single candidate gene for the grapevine veraison locus Ver1

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Lena Frenzke - , Chair of Botany (Author)
  • Franco Röckel - , Julius Kühn Institute - Federal Research Centre for Cultivated Plants (Author)
  • Torsten Wenke - , ASGEN GmbH & Co KG (Author)
  • Florian Schwander - , Julius Kühn Institute - Federal Research Centre for Cultivated Plants (Author)
  • Konrad Grützmann - , ASGEN GmbH & Co KG (Author)
  • Julia Naumann - , Chair of Botany (Author)
  • Falk Zakrzewski - , ASGEN GmbH & Co KG (Author)
  • Tom Heinekamp - , Julius Kühn Institute - Federal Research Centre for Cultivated Plants (Author)
  • Maria Maglione - , Julius Kühn Institute - Federal Research Centre for Cultivated Plants (Author)
  • Anja Wenke - , Chair of Botany (Author)
  • Anja Kögler - , Chair of Botany (Author)
  • Eva Zyprian - , Julius Kühn Institute - Federal Research Centre for Cultivated Plants (Author)
  • Andreas Dahl - , DRESDEN-concept Genome Center (CMCB Core Facility) (Author)
  • Franz Förster - , TUD Dresden University of Technology (Author)
  • Reinhard Töpfer - , Julius Kühn Institute - Federal Research Centre for Cultivated Plants (Author)
  • Stefan Wanke - , Chair of Botany, Universidad Nacional Autónoma de México, Senckenberg Gesellschaft für Naturforschung, Goethe University Frankfurt a.M. (Author)

Abstract

Veraison marks the transition from berry growth to berry ripening and is a crucial phenological stage in grapevine (Vitis vinifera): the berries become soft and begin to accumulate sugars, aromatic substances, and, in red cultivars, anthocyanins for pigmentation, while the organic acid levels begin to decrease. These changes determine the potential quality of wine. However, rising global temperatures lead to earlier flowering and ripening, which strongly influence wine quality. Here, we combined genotyping-by-sequencing with a bioinformatics pipeline on ∼150 F1 genotypes derived from a cross between the early ripening variety “Calardis Musqué” and the late-ripening variety “Villard Blanc”. Starting from 20,410 haplotype-based markers, we generated a high-density genetic map and performed a quantitative trait locus analysis based on phenotypic datasets evaluated over 20 yrs. Through locus-specific marker enrichment and recombinant screening of ∼1,000 additional genotypes, we refined the originally postulated 5-Mb veraison locus, Ver1, on chromosome 16 to only 112 kb, allowing us to pinpoint the ethylene response factor VviERF027 (VCost.v3 gene ID: Vitvi16g00942, CRIBIv1 gene ID: VIT_16s0100g00400) as veraison candidate gene. Furthermore, the early veraison allele could be traced back to a clonal “Pinot” variant first mentioned in the seventeenth century. “Pinot Precoce Noir” passed this allele over “Madeleine Royale” to the maternal grandparent “Bacchus Weiss” and, ultimately, to the maternal parent “Calardis Musqué”. Our findings are crucial for ripening time control, thereby improving wine quality, and for breeding grapevines adjusted to climate change scenarios that have a major impact on agro-ecosystems in altering crop plant phenology.

Details

Original languageEnglish
Pages (from-to)244-260
Number of pages17
JournalPlant physiology
Volume196
Issue number1
Publication statusPublished - Sept 2024
Peer-reviewedYes

External IDs

PubMed 38743690

Keywords

ASJC Scopus subject areas