From malaria to cancer: Computational drug repositioning of amodiaquine using PLIP interaction patterns

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

Abstract

Drug repositioning identifies new indications for known drugs. Here we report repositioning of the malaria drug amodiaquine as a potential anti-cancer agent. While most repositioning efforts emerge through serendipity, we have devised a computational approach, which exploits interaction patterns shared between compounds. As a test case, we took the anti-viral drug brivudine (BVDU), which also has anti-cancer activity, and defined ten interaction patterns using our tool PLIP. These patterns characterise BVDU's interaction with its target s. Using PLIP we performed an in silico screen of all structural data currently available and identified the FDA approved malaria drug amodiaquine as a promising repositioning candidate. We validated our prediction by showing that amodiaquine suppresses chemoresistance in a multiple myeloma cancer cell line by inhibiting the chaperone function of the cancer target Hsp27. This work proves that PLIP interaction patterns are viable tools for computational repositioning and can provide search query information from a given drug and its target to identify structurally unrelated candidates, including drugs approved by the FDA, with a known safety and pharmacology profile. This approach has the potential to reduce costs and risks in drug development by predicting novel indications for known drugs and drug candidates.

Details

Original languageEnglish
Article number11401
JournalScientific Reports
Volume7
Issue number1
Publication statusPublished - 12 Sept 2017
Peer-reviewedYes

External IDs

Scopus 85029331727
PubMed 28900272
PubMedCentral PMC5595859
ORCID /0000-0003-2848-6949/work/141543332
ORCID /0000-0002-6669-4995/work/142251822

Keywords

Sustainable Development Goals

Keywords

  • Amodiaquine/chemistry, Antimalarials/chemistry, Antineoplastic Agents/chemistry, Cell Line, Tumor, Computational Biology/methods, Drug Repositioning/methods, HSP27 Heat-Shock Proteins/antagonists & inhibitors, Humans, Ligands, Models, Molecular, Molecular Conformation, Protein Binding, Reproducibility of Results, Structure-Activity Relationship