Enzymatic machinery of wood-inhabiting fungi that degrade temperate tree species

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Lydia Kipping - , Coburg University (Author)
  • Nico Jehmlich - , Helmholtz Centre for Environmental Research (Author)
  • Julia Moll - , Helmholtz Centre for Environmental Research (Author)
  • Matthias Noll - , Coburg University, University of Bayreuth (Author)
  • Martin M Gossner - , Swiss Federal Institute for Forest, Snow and Landscape Research, ETH Zurich (Author)
  • Tim Van Den Bossche - , VIB-UGent Center for Medical Biotechnology, Ghent University (Author)
  • Pascal Edelmann - , Technical University of Munich (Author)
  • Werner Borken - , University of Bayreuth (Author)
  • Martin Hofrichter - , Chair of Environmental Biotechnology (Author)
  • Harald Kellner - , Chair of Environmental Biotechnology (Author)

Abstract

Deadwood provides habitat for fungi and serves diverse ecological functions in forests. We already have profound knowledge of fungal assembly processes, physiological and enzymatic activities, and resulting physico-chemical changes during deadwood decay. However, in situ detection and identification methods, fungal origins, and a mechanistic understanding of the main lignocellulolytic enzymes are lacking. This study used metaproteomics to detect the main extracellular lignocellulolytic enzymes in 12 tree species in a temperate forest that have decomposed for 8 ½ years. Mainly white-rot (and few brown-rot) Basidiomycota were identified as the main wood decomposers, with Armillaria as the dominant genus; additionally, several soft-rot xylariaceous Ascomycota were identified. The key enzymes involved in lignocellulolysis included manganese peroxidase, peroxide-producing alcohol oxidases, laccase, diverse glycoside hydrolases (cellulase, glucosidase, xylanase), esterases, and lytic polysaccharide monooxygenases. The fungal community and enzyme composition differed among the 12 tree species. Ascomycota species were more prevalent in angiosperm logs than in gymnosperm logs. Regarding lignocellulolysis as a function, the extracellular enzyme toolbox acted simultaneously and was interrelated (e.g. peroxidases and peroxide-producing enzymes were strongly correlated), highly functionally redundant, and present in all logs. In summary, our in situ study provides comprehensive and detailed insight into the enzymatic machinery of wood-inhabiting fungi in temperate tree species. These findings will allow us to relate changes in environmental factors to lignocellulolysis as an ecosystem function in the future.

Details

Original languageEnglish
Article numberwrae050
JournalThe ISME journal
Volume18
Issue number1
Publication statusPublished - 19 Mar 2024
Peer-reviewedYes

External IDs

Scopus 85190904333
PubMed 38519103

Keywords

Subject groups, research areas, subject areas according to Destatis

Keywords

  • Trees, Ascomycota, Fungi, Peroxides/metabolism, Wood/microbiology, Basidiomycota/physiology, Ecosystem