Deep Neural Cellular Potts Models

Research output: Contribution to book/Conference proceedings/Anthology/ReportConference contributionContributedpeer-review

Contributors

Abstract

The cellular Potts model (CPM) is a powerful computational method for simulating collective spatiotemporal dynamics of biological cells. To drive the dynamics, CPMs rely on physicsinspired Hamiltonians. However, as first principles remain elusive in biology, these Hamiltonians only approximate the full complexity of real multicellular systems. To address this limitation, we propose NeuralCPM, a more expressive cellular Potts model that can be trained directly on observational data. At the core of NeuralCPM lies the Neural Hamiltonian, a neural network architecture that respects universal symmetries in collective cellular dynamics. Moreover, this approach enables seamless integration of domain knowledge by combining known biological mechanisms and the expressive Neural Hamiltonian into a hybrid model. Our evaluation with synthetic and real-world multicellular systems demonstrates that NeuralCPM is able to model cellular dynamics that cannot be accounted for by traditional analytical Hamiltonians.

Details

Original languageEnglish
Title of host publicationProceedings of the 42nd International Conference on Machine Learning
Pages44351-44371
Number of pages21
Volume267
ISBN (electronic)2640-3498
Publication statusPublished - 2025
Peer-reviewedYes

Publication series

SeriesProceedings of Machine Learning Research

Conference

Title42nd International Conference on Machine Learning
Abbreviated titleICML 2025
Conference number42
Duration13 - 19 July 2025
Website
LocationVancouver Convention Center
CityVancouver
CountryCanada

External IDs

ORCID /0000-0003-0137-5106/work/199957821
ORCID /0000-0003-3649-2433/work/199961956

Keywords

Research priority areas of TU Dresden

Keywords

  • Morpheus, AI-based methods