Biology-inspired visualization of morphogenetic motion in the zebrafish endoderm

Research output: Contribution to book/conference proceedings/anthology/reportConference contributionContributedpeer-review

Contributors

Abstract

Effective visualization of large, multidimensional image data is a key instrument for data exploration in biological and medical applications. We propose a method to visualize motion patterns on a spherical surface, illustrated for the example of the zebrafish embryo. In particular, we analyze cellular motion by integrating prior knowledge about the underlying biological process and show how this improves visualization and connects to the conceptional description of the gastrulation process. We conclude that specialized visualizations are necessary to match data representation with conceptional ideas and to get a more intuitive understanding of the design principles of embryonic tissue formation.

Details

Original languageEnglish
Title of host publication2016 IEEE International Symposium on Biomedical Imaging
PublisherIEEE Computer Society
Pages925-929
Number of pages5
ISBN (electronic)9781479923502
Publication statusPublished - 15 Jun 2016
Peer-reviewedYes

Publication series

SeriesProceedings - International Symposium on Biomedical Imaging
Volume2016-June
ISSN1945-7928

Conference

Title13th IEEE International Symposium on Biomedical Imaging
SubtitleFrom Nano to Macro
Abbreviated titleISBI 2016
Conference number13
Duration13 - 16 April 2016
Degree of recognitionInternational event
CityPrague
CountryCzech Republic

External IDs

ORCID /0000-0002-2524-1199/work/153110190

Keywords

Keywords

  • data visualization, embryogenesis, endoderm, gastrulation, tissue formation, zebrafish