Biology-inspired visualization of morphogenetic motion in the zebrafish endoderm
Research output: Contribution to book/Conference proceedings/Anthology/Report › Conference contribution › Contributed › peer-review
Contributors
Abstract
Effective visualization of large, multidimensional image data is a key instrument for data exploration in biological and medical applications. We propose a method to visualize motion patterns on a spherical surface, illustrated for the example of the zebrafish embryo. In particular, we analyze cellular motion by integrating prior knowledge about the underlying biological process and show how this improves visualization and connects to the conceptional description of the gastrulation process. We conclude that specialized visualizations are necessary to match data representation with conceptional ideas and to get a more intuitive understanding of the design principles of embryonic tissue formation.
Details
Original language | English |
---|---|
Title of host publication | 2016 IEEE International Symposium on Biomedical Imaging |
Publisher | IEEE Computer Society |
Pages | 925-929 |
Number of pages | 5 |
ISBN (electronic) | 9781479923502 |
Publication status | Published - 15 Jun 2016 |
Peer-reviewed | Yes |
Publication series
Series | Proceedings - International Symposium on Biomedical Imaging |
---|---|
Volume | 2016-June |
ISSN | 1945-7928 |
Conference
Title | 13th IEEE International Symposium on Biomedical Imaging |
---|---|
Subtitle | From Nano to Macro |
Abbreviated title | ISBI 2016 |
Conference number | 13 |
Duration | 13 - 16 April 2016 |
Degree of recognition | International event |
City | Prague |
Country | Czech Republic |
External IDs
ORCID | /0000-0002-2524-1199/work/153110190 |
---|
Keywords
ASJC Scopus subject areas
Keywords
- data visualization, embryogenesis, endoderm, gastrulation, tissue formation, zebrafish