Biobeam-Multiplexed wave-optical simulations of light-sheet microscopy
Research output: Contribution to journal › Research article › Contributed › peer-review
Contributors
Abstract
Sample-induced image-degradation remains an intricate wave-optical problem in light-sheet microscopy. Here we present biobeam, an open-source software package that enables simulation of operational light-sheet microscopes by combining data from 105-106 multiplexed and GPU-accelerated point-spread-function calculations. The wave-optical nature of these simulations leads to the faithful reproduction of spatially varying aberrations, diffraction artifacts, geometric image distortions, adaptive optics, and emergent wave-optical phenomena, and renders image-formation in light-sheet microscopy computationally tractable.
Details
| Original language | English |
|---|---|
| Article number | e1006079 |
| Journal | PLOS computational biology |
| Volume | 14 |
| Issue number | 4 |
| Publication status | Published - Apr 2018 |
| Peer-reviewed | Yes |
External IDs
| PubMedCentral | PMC5898703 |
|---|---|
| Scopus | 85046360092 |
| ORCID | /0000-0002-7780-9057/work/176863465 |
Keywords
Keywords
- Computational Biology, Computer Simulation, Image Enhancement/methods, Image Processing, Computer-Assisted/methods, Imaging, Three-Dimensional/methods, Light, Microscopy, Fluorescence/methods, Optical Phenomena, Scattering, Radiation, Software