Biobeam-Multiplexed wave-optical simulations of light-sheet microscopy

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Martin Weigert - , Max Planck Institute of Molecular Cell Biology and Genetics, Center for Systems Biology Dresden (CSBD) (Author)
  • Kaushikaram Subramanian - , Max Planck Institute of Molecular Cell Biology and Genetics, Center for Systems Biology Dresden (CSBD) (Author)
  • Sebastian T Bundschuh - , Max Planck Institute of Molecular Cell Biology and Genetics (Author)
  • Eugene W Myers - , TUD Dresden University of Technology (Author)
  • Moritz Kreysing - , Center for Systems Biology Dresden (CSBD) (Author)

Abstract

Sample-induced image-degradation remains an intricate wave-optical problem in light-sheet microscopy. Here we present biobeam, an open-source software package that enables simulation of operational light-sheet microscopes by combining data from 105-106 multiplexed and GPU-accelerated point-spread-function calculations. The wave-optical nature of these simulations leads to the faithful reproduction of spatially varying aberrations, diffraction artifacts, geometric image distortions, adaptive optics, and emergent wave-optical phenomena, and renders image-formation in light-sheet microscopy computationally tractable.

Details

Original languageEnglish
Article numbere1006079
JournalPLOS computational biology
Volume14
Issue number4
Publication statusPublished - Apr 2018
Peer-reviewedYes

External IDs

PubMedCentral PMC5898703
Scopus 85046360092
ORCID /0000-0002-7780-9057/work/176863465

Keywords

Keywords

  • Computational Biology, Computer Simulation, Image Enhancement/methods, Image Processing, Computer-Assisted/methods, Imaging, Three-Dimensional/methods, Light, Microscopy, Fluorescence/methods, Optical Phenomena, Scattering, Radiation, Software