A window-based time series feature extraction method

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Deniz Katircioglu-Öztürk - , Middle East Technical University (Author)
  • H. Altay Güvenir - , Bilkent University (Author)
  • Ursula Ravens - , TUD Dresden University of Technology, University Medical Center Freiburg (Author)
  • Nazife Baykal - , Middle East Technical University (Author)

Abstract

This study proposes a robust similarity score-based time series feature extraction method that is termed as Window-based Time series Feature ExtraCtion (WTC). Specifically, WTC generates domain-interpretable results and involves significantly low computational complexity thereby rendering itself useful for densely sampled and populated time series datasets. In this study, WTC is applied to a proprietary action potential (AP) time series dataset on human cardiomyocytes and three precordial leads from a publicly available electrocardiogram (ECG) dataset. This is followed by comparing WTC in terms of predictive accuracy and computational complexity with shapelet transform and fast shapelet transform (which constitutes an accelerated variant of the shapelet transform). The results indicate that WTC achieves a slightly higher classification performance with significantly lower execution time when compared to its shapelet-based alternatives. With respect to its interpretable features, WTC has a potential to enable medical experts to explore definitive common trends in novel datasets.

Details

Original languageEnglish
Pages (from-to)466-486
Number of pages21
JournalComputers in biology and medicine
Volume89
Publication statusPublished - 1 Oct 2017
Peer-reviewedYes

External IDs

PubMed 28886483

Keywords

Keywords

  • Atrial fibrillation, Cardiac action potential, Electrocardiography, Feature extraction, Myocardial infarction, Time series analysis