Variational inference accelerates accurate DNA mixture deconvolution
Research output: Contribution to journal › Research article › Contributed › peer-review
Contributors
Abstract
We investigate a class of DNA mixture deconvolution algorithms based on variational inference, and we show that this can significantly reduce computational runtimes with little or no effect on the accuracy and precision of the result. In particular, we consider Stein Variational Gradient Descent (SVGD) and Variational Inference (VI) with an evidence lower-bound objective. Both provide alternatives to the commonly used Markov-Chain Monte-Carlo methods for estimating the model posterior in Bayesian probabilistic genotyping. We demonstrate that both SVGD and VI significantly reduce computational costs over the current state of the art. Importantly, VI does so without sacrificing precision or accuracy, presenting an overall improvement over previously published methods.
Details
Original language | English |
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Article number | 102890 |
Journal | Forensic Science International: Genetics |
Volume | 65 |
Publication status | Published - Jul 2023 |
Peer-reviewed | Yes |
External IDs
PubMed | 37257308 |
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ORCID | /0000-0003-4414-4340/work/159608270 |
Keywords
ASJC Scopus subject areas
Keywords
- Bayesian inference, Precision, Probabilistic genotyping, Runtime, Stein variational gradient descent, Variational inference