Theory of time delayed genetic oscillations with external noisy regulation

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Jose Negrete - , Max-Planck-Institute for the Physics of Complex Systems, Swiss Federal Institute of Technology Lausanne (EPFL) (Author)
  • Iván M. Lengyel - , Max-Planck-Institute for the Physics of Complex Systems, Instituto Partner de la Sociedad Max Planck (IBioBA-MPSP) (Author)
  • Laurel Rohde - , Swiss Federal Institute of Technology Lausanne (EPFL), The Francis Crick Institute (Author)
  • Ravi A. Desai - , The Francis Crick Institute (Author)
  • Andrew C. Oates - , Swiss Federal Institute of Technology Lausanne (EPFL), The Francis Crick Institute, University College London (Author)
  • Frank Jülicher - , Max-Planck-Institute for the Physics of Complex Systems, TUD Dresden University of Technology, Clusters of Excellence PoL: Physics of Life (Author)

Abstract

We present a general theory of noisy genetic oscillators with externally regulated production rate and multiplicative noise. The observables that characterize the genetic oscillator are discussed, and it is shown how their statistics depend on the externally regulated production rate. We show that these observables have generic features that are observed in two different experimental systems: the expression of the circadian clock genes in fibroblasts, and in the transient and oscillatory dynamics of the segmentation clock genes observed in cells disassociated from zebrafish embryos. Our work shows that genetic oscillations with diverse biological contexts can be understood in a common framework based on a delayed negative feedback system, and regulator dynamics.

Details

Original languageEnglish
Article number033030
JournalNew journal of physics
Volume23
Issue number3
Publication statusPublished - Mar 2021
Peer-reviewedYes

Keywords

ASJC Scopus subject areas

Keywords

  • Analytical calculations, Circadian rhythm, Delay differential equations, Genetic oscillations, Segmentation clock, Transient noisy dynamics