Structure-function analysis of a phage display-derived peptide that binds to insulin-like growth factor binding protein 1

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • N J Skelton - , Genentech Incorporated (Author)
  • Y M Chen - , Genentech Incorporated (Author)
  • N Dubree - , Genentech Incorporated (Author)
  • C Quan - , Genentech Incorporated (Author)
  • D Y Jackson - , Genentech Incorporated (Author)
  • A Cochran - , Genentech Incorporated (Author)
  • K Zobel - , Genentech Incorporated (Author)
  • K Deshayes - , Genentech Incorporated (Author)
  • M Baca - , Genentech Incorporated (Author)
  • M T Pisabarro - , Structural Bioinformatics (Research Group), Biotechnology Center, Genentech Incorporated (Author)
  • H B Lowman - , Genentech Incorporated (Author)

Abstract

Highly structured, peptide antagonists of the interaction between insulin-like growth factor 1 (IGF-I) and IGF binding protein 1 (IGFBP-1) have recently been discovered by phage display of naïve peptide libraries [Lowman, H. B., et al. (1998) Biochemistry 37, 8870--8878]. We now report a detailed analysis of the features of this turn-helix peptide motif that are necessary for IGFBP-1 binding and structural integrity. Further rounds of phage randomization indicate the importance of residues contributing to a hydrophobic patch on one face of the helix. Alanine-scanning substitutions confirm that the hydrophobic residues are necessary for binding. However, structural analysis by NMR spectroscopy indicates that some of these analogues are less well folded. Structured, high-affinity analogues that lack the disulfide bond were prepared by introducing a covalent constraint between side chains at positions i and i + 7 or i + 8 within the helix. Analogues based on this scaffold demonstrate that a helical conformation is present in the bound state, and that hydrophobic side chains in this helix, and residues immediately preceding it, interact with IGFBP-1. By comparison of alanine scanning data for IGF-I and the turn-helix peptide, we propose a model for common surface features of these molecules that recognize IGFBP-1.

Details

Original languageEnglish
Pages (from-to)8487-98
Number of pages12
Journal Biochemistry : a weekly publication of the American Chemical Society
Volume40
Issue number29
Publication statusPublished - 24 Jul 2001
Peer-reviewedYes

External IDs

Scopus 0035943101

Keywords

Keywords

  • Alanine/genetics, Amino Acid Sequence, Amino Acid Substitution/genetics, Animals, Bacteriophage M13/metabolism, Binding, Competitive/genetics, CHO Cells, Conserved Sequence, Cricetinae, Crystallography, X-Ray, Humans, Insulin-Like Growth Factor Binding Protein 1/metabolism, Insulin-Like Growth Factor I/metabolism, Kinetics, Molecular Mimicry, Molecular Sequence Data, Mutagenesis, Site-Directed, Peptide Library, Peptides/chemical synthesis, Protein Binding/genetics, Protein Structure, Secondary, Structure-Activity Relationship, Surface Plasmon Resonance, Surface Properties

Library keywords