Searching natural product databases

Research output: Contribution to book/Conference proceedings/Anthology/ReportChapter in book/Anthology/ReportContributedpeer-review

Contributors

  • Fidele Ntie-Kang - , University of Buea, Martin Luther University Halle-Wittenberg, TUD Dresden University of Technology (Author)
  • Kiran K. Telukunta - , International Solar Energy Society (Author)
  • Linda Jahn - , Chair of Plant Physiology (Author)
  • Jutta Ludwig-Müller - , Chair of Plant Physiology (Author)

Abstract

This article was originally conceived as a set of tutorial exercises for undergraduate biology majors for a natural products course at the Institute of Botany, Technische Universität Dresden (2020/21 academic year). The overall goals of these exercises are to identify different compound databases (open access and commercial) from which compounds could be searched for academic reasons. The reader will be Initiated to basic tools for querying compound databases (including searching for molecular properties, similarity searching and sub-structure searching), the concept of chemical scaffolds and the familiarity with the major chemical scaffolds encountered in the natural products lectures. In addition, the read should be able to identify two secondary metabolite databases and use the web to search them, use of the web browser for querying compound databases (including searching for molecular properties, similarity searching and sub-structure searching). Application of the concept of chemical scaffolds and the familiarity with the major chemical scaffolds encountered in natural products lectures is expected. The last set of tutorial exercises are intended to identify databases containing taxonomic information on plants and animal species, use a web browser to search the contents of two open access databases that help to establish the taxonomy of medicinal plants. This includes establishing a clear definition of chemotaxonomy by use of examples. e.g. employ the ANPDB to establish the relationship between a selected list of plant families and their chemical content.

Details

Original languageEnglish
Title of host publicationChemoinformatics of natural products
PublisherDe Gruyter, Boston
Chapter13
Pages271-285
Number of pages15
Volume2
ISBN (electronic)9783110668896
ISBN (print)9783110668889
Publication statusPublished - 22 Nov 2021
Peer-reviewedYes

External IDs

Scopus 85143561032
ORCID /0000-0001-9147-4188/work/142257662

Keywords

Keywords

  • Chemotaxonomy, Databases, Drug discovery, Natural products, Scaffolds