Patient-specific pharmacogenomics demonstrates xCT as predictive therapeutic target in colon cancer with possible implications in tumor connectivity

Research output: Contribution to journal › Research article › Contributed › peer-review

Contributors

  • Marco Strecker - , University Hospital Magdeburg (Author)
  • Keren Zohar - , Hebrew University of Jerusalem (Author)
  • Martin Böttcher - , University Hospital Magdeburg (Author)
  • Thomas Wartmann - , Hebrew University of Jerusalem (Author)
  • Henry Freudenstein - , University Hospital Magdeburg (Author)
  • Maximilian Doelling - , University Hospital Magdeburg (Author)
  • Mihailo Andric - , University Hospital Magdeburg (Author)
  • Wenjie Shi - , University Hospital Magdeburg (Author)
  • Or Kakhlon - , Hadassah Medical Center (Author)
  • Katrin Hippe - , University of Regensburg (Author)
  • Beatrix Jahnke - , Department of Visceral, Thoracic and Vascular Surgery (Author)
  • Dimitrios Mougiakakos - , University Hospital Magdeburg (Author)
  • Franziska Baenke - , Department of Visceral, Thoracic and Vascular Surgery, National Center for Tumor Diseases Dresden (NCT/UCC) (Author)
  • Daniel Stange - , Department of Visceral, Thoracic and Vascular Surgery, National Center for Tumor Diseases Dresden (Author)
  • Roland S Croner - , University Hospital Magdeburg (Author)
  • Michal Linial - , Hebrew University of Jerusalem (Author)
  • Ulf D Kahlert - , Otto von Guericke University Magdeburg (Author)

Abstract

Colorectal cancer (CRC) represents the third leading cause of cancer-related deaths. Integrating cellular and molecular data from individual patients has become valuable for diagnosis, prognosis, and treatment selection. Here, we present a comparative mRNA-seq analysis of tissue samples from 32 CRC patients, pairing tumors with adjacent healthy tissues. Differential expression gene (DEG) analysis revealed dysregulated metabolic programs. We focused on the impact of overexpressed SLC7A11 (xCT) and SLC3A2, which compose the cystine/glutamate transporter (Xc-) system. To assess the oncogenic potential of the Xc- system, we analyzed gene perturbations from CRISPR screens across various cell types and used functional assays in five primary patient-derived organoid models. We identified a previously uncharacterized cell surface protein signature predicting chemotherapy resistance and highlighted the causality and potential of pharmacological blockage of ferroptosis as a promising avenue for cancer therapy. Redox homeostasis, ion/amino acid transporters, and regulators of neuronal survival and differentiation were pathways associated with these co-dependent genes in patient specimens. This study highlights several potential clinical targets for CRC therapy and promotes the use of patient-derived organoids oids to functionally validate in silico predictions.

Details

Original languageEnglish
Pages (from-to)428-446
Number of pages19
JournalMolecular Oncology
Volume20
Issue number2
Early online date24 Sept 2025
Publication statusPublished - Feb 2026
Peer-reviewedYes

External IDs

Scopus 105017424332
ORCID /0000-0003-4246-2230/work/199962349
ORCID /0000-0001-9389-4688/work/199962777

Keywords