Swarm effects in bubble columns result from the interaction of the bubbles at higher gas holdup. The flow around individual bubbles in a swarm influences the movement of the following bubbles and this has a feedback on the flow regime on a larger scale. That is, hydrodynamics that can no longer be described with models for single rising bubbles. The experimental investigation of the multiscale hydrodynamics in three-dimensional bubble columns was so far limited by the available measurement techniques. In this study, ultrafast X-ray tomography (UFXCT) was applied on bubbly flows in a lab scale bubble column to determine inter-bubble distances and clustering characteristics in the vicinity of individual bubbles for different gas holdups and bubble diameters. Applying the pair correlation function reveals a pronounced vertical clustering for large bubbles with Eo ≥ 3.82, whereas no clustering has been observed for bubbles of lower Eo. It was found that clustering orientation mainly depends on deformability of the bubbles but not on gas holdup.