Nature AND nurture: enabling formate-dependent growth in Methanosarcina acetivorans

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Jichen Bao - , Aalto University (Author)
  • Tejas Somvanshi - , Aalto University (Author)
  • Yufang Tian - , Aalto University (Author)
  • Maxime G. Laird - , Aalto University (Author)
  • Pierre Simon Garcia - , Université Paris Cité (Author)
  • Christian Schöne - , Chair of Microbial Diversity (Author)
  • Michael Rother - , Chair of Microbial Diversity (Author)
  • Guillaume Borrel - , Université Paris Cité (Author)
  • Silvan Scheller - , Aalto University (Author)

Abstract

Methanosarcinales are versatile methanogens, capable of regulating most types of methanogenic pathways. Despite the versatile metabolic flexibility of Methanosarcinales, no member of this order has been shown to use formate for methanogenesis. In the present study, we identified a cytosolic formate dehydrogenase (FdhAB) present in several Methanosarcinales, likely acquired by independent horizontal gene transfers after an early evolutionary loss, encouraging re-evaluation of our understanding of formate utilization in Methanosarcinales. To explore whether formate-dependent (methyl-reducing or CO2-reducing) methanogenesis can occur in Methanosarcinales, we engineered two different strains of Methanosarcina acetivorans by functionally expressing FdhAB from Methanosarcina barkeri in M. acetivorans. In the first strain, fdhAB was integrated into the N5-methyl- tetrahydrosarcinapterin:coenzyme M methyltransferase (mtr) operon, making it capable of growing by reducing methanol with electrons from formate. In the second strain, fdhAB was integrated into the F420-reducing hydrogenase (frh) operon, instead of the mtr operon, enabling its growth with formate as the only source of carbon and energy after adaptive laboratory evolution. In this strain, one CO2 is reduced to one methane with electrons from oxidizing four formate to four CO2, a metabolism reported only in methanogens without cytochromes. Although methanogens without cytochromes typically utilize flavin-based electron bifurcation to generate the ferredoxins needed for CO2 activation, we hypothesize that, in our engineered strains, reduced ferredoxins are obtained via the Rhodobacter nitrogen fixation complex complex running in reverse. Our work demonstrates formate-dependent methyl-reducing and CO2-reducing methanogenesis in M. acetivorans that is enabled by the flexible nature of the microbe working in tandem with the nurturing provided.

Details

Original languageEnglish
Pages (from-to)2251-2271
Number of pages21
JournalFEBS Journal
Volume292
Issue number9
Early online date31 Jan 2025
Publication statusPublished - May 2025
Peer-reviewedYes

Keywords

Keywords

  • ferredoxin, formate dehydrogenase, metabolic engineering, methane, Methanosarcina