Loop extrusion driven volume phase transition of entangled chromosomes
Research output: Contribution to journal › Research article › Contributed › peer-review
Contributors
Abstract
Experiments on reconstituted chromosomes have revealed that mitotic chromosomes are assembled even without nucleosomes. When topoisomerase II (topo II) is depleted from such reconstituted chromosomes, these chromosomes are not disentangled and form “sparklers,” where DNA and linker histone are condensed in the core and condensin is localized at the periphery. To understand the mechanism of the assembly of sparklers, we here take into account the loop extrusion by condensin in an extension of the theory of entangled polymer gels. The loop extrusion stiffens an entangled DNA network because DNA segments in the elastically effective chains are translocated to loops, which are elastically ineffective. Our theory predicts that the loop extrusion by condensin drives the volume phase transition that collapses a swollen entangled DNA gel because the stiffening of the network destabilizes the swollen phase. This may be an important piece to understand the mechanism of the assembly of mitotic chromosomes.
Details
Original language | English |
---|---|
Pages (from-to) | 2742-2750 |
Number of pages | 9 |
Journal | Biophysical Journal |
Volume | 121 |
Issue number | 14 |
Publication status | Published - 14 Jun 2022 |
Peer-reviewed | Yes |
External IDs
Scopus | 85132907326 |
---|---|
PubMed | 35706364 |
WOS | 000837982600008 |
Mendeley | 7345b12b-9ddb-3144-9bb7-504fce36fe08 |
Keywords
ASJC Scopus subject areas
Keywords
- Chromatin, Chromosomes/metabolism, DNA/genetics, DNA Topoisomerases, Type II/genetics, Histones/genetics, Mitosis, Nucleosomes, Organization, Elasticity, Roles, Condensation, Dynamics, Dna, Bacteria