Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Ellen M. Adams - , Ruhr University Bochum (Author)
  • Simone Pezzotti - , Ruhr University Bochum (Author)
  • Jonas Ahlers - , Ruhr University Bochum (Author)
  • Maximilian Rüttermann - , Ruhr University Bochum (Author)
  • Maxim Levin - , Weizmann Institute of Science (Author)
  • Adi Goldenzweig - , Weizmann Institute of Science (Author)
  • Yoav Peleg - , Weizmann Institute of Science (Author)
  • Sarel J. Fleishman - , Weizmann Institute of Science (Author)
  • Irit Sagi - , Weizmann Institute of Science (Author)
  • Martina Havenith - , Ruhr University Bochum (Author)

Abstract

Although it is well-known that limited local mutations of enzymes, such as matrix metalloproteinases (MMPs), may change enzyme activity by orders of magnitude as well as its stability, the completely rational design of proteins is still challenging. These local changes alter the electrostatic potential and thus local electrostatic fields, which impacts the dynamics of water molecules close the protein surface. Here we show by a combined computational design, experimental, and molecular dynamics (MD) study that local mutations have not only a local but also a global effect on the solvent: In the specific case of the matrix metalloprotease MMP14, we found that the nature of local mutations, coupled with surface morphology, have the ability to influence large patches of the water hydrogen-bonding network at the protein surface, which is correlated with stability. The solvent contribution can be experimentally probed via terahertz (THz) spectroscopy, thus opening the door to the exciting perspective of rational protein design in which a systematic tuning of hydration water properties allows manipulation of protein stability and enzymatic activity.

Details

Original languageEnglish
Pages (from-to)1076-1085
Number of pages10
JournalJACS Au
Volume1
Issue number7
Early online date18 Jun 2021
Publication statusPublished - 26 Jul 2021
Peer-reviewedYes
Externally publishedYes

External IDs

ORCID /0000-0002-8120-8553/work/161409570
PubMed 34337607

Keywords

Keywords

  • local thermodynamics, matrix metalloproteinase, molecular dynamics, rational design, solvation science, THz spectroscopy

Library keywords