Lack of association between classical HLA genes and asymptomatic SARS-CoV-2 infection

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • NIAID-USUHS COVID Study Group - (Author)
  • COVID Human Genetic Effort - (Author)
  • COVIDef Study Group - (Author)
  • French COVID Cohort Study Group - (Author)
  • CoV-Contact Cohort - (Author)
  • COVID-STORM Clinicians - (Author)
  • COVID Clinicians - (Author)
  • Orchestra Working Group - (Author)
  • Amsterdam UMC COVID-19 Biobank - (Author)
  • Catharina Schuetz - , Department of Paediatrics (Author)
  • Imagine Institute
  • Université Paris Cité
  • Helix
  • University of Nevada, Reno
  • Imperial College London
  • National Institute of Allergy and Infectious Diseases (NIAID)
  • hVIVO Services Limited
  • Garvan Institute of Medical Research
  • University of New South Wales
  • Rockefeller University
  • Utrecht University
  • Leidos Inc
  • Sorbonne Université
  • Necker–Enfants Malades Hospital
  • Howard Hughes Medical Institute
  • Uniformed Services University of the Health Sciences

Abstract

Human genetic studies of critical COVID-19 pneumonia have revealed the essential role of type I interferon-dependent innate immunity to SARS-CoV-2 infection. Conversely, an association between the HLA-B∗15:01 allele and asymptomatic SARS-CoV-2 infection in unvaccinated individuals was recently reported, suggesting a contribution of pre-existing T cell-dependent adaptive immunity. We report a lack of association of classical HLA alleles, including HLA-B∗15:01, with pre-omicron asymptomatic SARS-CoV-2 infection in unvaccinated participants in a prospective population-based study in the United States (191 asymptomatic vs. 945 symptomatic COVID-19 cases). Moreover, we found no such association in the international COVID Human Genetic Effort cohort (206 asymptomatic vs. 574 mild or moderate COVID-19 cases and 1,625 severe or critical COVID-19 cases). Finally, in the Human Challenge Characterisation study, the three HLA-B∗15:01 individuals infected with SARS-CoV-2 developed symptoms. As with other acute primary infections studied, no classical HLA alleles favoring an asymptomatic course of SARS-CoV-2 infection were identified.

Details

Original languageEnglish
Article number100300
Number of pages12
JournalHuman Genetics and Genomics Advances
Volume5
Issue number3
Publication statusPublished - 18 Jul 2024
Peer-reviewedYes

External IDs

PubMed 38678364
ORCID /0009-0003-6519-0482/work/176343625

Keywords

ASJC Scopus subject areas

Keywords

  • association, asymptomatic infection, COVID-19, HLA, population stratification