Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes
Research output: Contribution to journal › Research article › Contributed › peer-review
Contributors
- Chair of Limnology
- Technical University of Denmark
- University of Bologna
- Eotvos Lorand University
- University of Oxford
- University of Exeter
- Abu Dhabi Public Health Center
- Virginia Polytechnic Institute and State University
- University of Washington
- Tufts University
- Marquette University
- Mustafa Kemal University
- Sokoine University of Agriculture
- ARA Region Bern
- Sudan University of Science and Technology
- University of Valencia
- Instituto de Salud Carlos III
- Autonomous University of Barcelona
- Universidad Católica San Antonio de Murcia
- University of Pretoria
- Nanyang Technological University
- University of Belgrade
- King Abdullah University of Science and Technology
- Korea Advanced Institute of Science and Technology
- Gwangju Institute of Science and Technology
- Polytechnic Institute of Leiria
- Catholic University of Portugal
- Águas de Portugal, SGPS, S.A.
- National Veterinary Research Institute
- Laboratorio Central de Salud Publico
- Veas AS
Abstract
Antimicrobial resistance genes (ARGs) have rapidly emerged and spread globally, but the pathways driving their spread remain poorly understood. We analyzed 1240 sewage samples from 351 cities across 111 countries, comparing ARGs known to be mobilized with those identified through functional metagenomics (FG). FG ARGs showed stronger associations with bacterial taxa than the acquired ARGs. Network analyses further confirmed this and showed potential for source attribution of both known and novel ARGs. The FG resistome was more evenly dispersed globally, whereas the acquired resistome followed distinct geographical patterns. City-wise distance-decay analyses revealed that the FG ARGs showed significant decay within countries but not across regions or globally. In contrast, acquired ARGs showed decay at both national and regional scales. At the variant level, both ARG groups had significant national and regional distance-decay effects, but only FG ARGs at a global scale. Additionally, we observed stronger distance effects in Sub-Saharan Africa and East Asia compared to North America. Our findings suggest that differential selection and niche competition, rather than dispersal, shape the global resistome patterns. A limited number of bacterial taxa may act as reservoirs of latent FG ARGs, highlighting the need of targeted surveillance to mitigate future resistance threats.
Details
| Original language | English |
|---|---|
| Article number | 10278 |
| Number of pages | 1 |
| Journal | Nature communications |
| Volume | 16 |
| Issue number | 1 |
| Publication status | Published - 21 Nov 2025 |
| Peer-reviewed | Yes |
External IDs
| Scopus | 105022670986 |
|---|---|
| PubMed | 41271719 |
| ORCID | /0000-0002-9301-1803/work/203067747 |
| ORCID | /0000-0003-1054-8080/work/203071228 |