Geographics and bacterial networks differently shape the acquired and latent global sewage resistomes

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Global Sewage Consortium - (Author)
  • Chair of Limnology
  • Technical University of Denmark
  • University of Bologna
  • Eotvos Lorand University
  • University of Oxford
  • University of Exeter
  • Scottish Environment Protection Agency
  • Dubai Municipality
  • Abu Dhabi Public Health Center
  • Virginia Polytechnic Institute and State University
  • University of Washington
  • Tufts University
  • Massachusetts Water Resources Authority
  • Marquette University
  • Mustafa Kemal University
  • Eastern Regional Health Authority of Trinidad and Tobago
  • Sokoine University of Agriculture
  • Taiwan Centers for Disease Control
  • ARA Region Bern
  • Sudan University of Science and Technology
  • University of Valencia
  • Instituto de Salud Carlos III
  • Autonomous University of Barcelona
  • Universidad Católica San Antonio de Murcia
  • University of Pretoria
  • National Laboratory of Health, Environment and Food
  • Public Health Authority of the Slovak Republic
  • Nanyang Technological University
  • University of Belgrade
  • King Abdullah University of Science and Technology
  • National Agency for Public Health
  • Korea Advanced Institute of Science and Technology
  • Gwangju Institute of Science and Technology
  • Polytechnic Institute of Leiria
  • Catholic University of Portugal
  • Águas de Portugal, SGPS, S.A.
  • National Veterinary Research Institute
  • Laboratorio Central de Salud Publico
  • Veas AS
  • Department of Agriculture, Environment and Rural Affairs of Northern Ireland

Abstract

Antimicrobial resistance genes (ARGs) have rapidly emerged and spread globally, but the pathways driving their spread remain poorly understood. We analyzed 1240 sewage samples from 351 cities across 111 countries, comparing ARGs known to be mobilized with those identified through functional metagenomics (FG). FG ARGs showed stronger associations with bacterial taxa than the acquired ARGs. Network analyses further confirmed this and showed potential for source attribution of both known and novel ARGs. The FG resistome was more evenly dispersed globally, whereas the acquired resistome followed distinct geographical patterns. City-wise distance-decay analyses revealed that the FG ARGs showed significant decay within countries but not across regions or globally. In contrast, acquired ARGs showed decay at both national and regional scales. At the variant level, both ARG groups had significant national and regional distance-decay effects, but only FG ARGs at a global scale. Additionally, we observed stronger distance effects in Sub-Saharan Africa and East Asia compared to North America. Our findings suggest that differential selection and niche competition, rather than dispersal, shape the global resistome patterns. A limited number of bacterial taxa may act as reservoirs of latent FG ARGs, highlighting the need of targeted surveillance to mitigate future resistance threats.

Details

Original languageEnglish
Article number10278
Number of pages1
JournalNature communications
Volume16
Issue number1
Publication statusPublished - 21 Nov 2025
Peer-reviewedYes

External IDs

Scopus 105022670986
PubMed 41271719
ORCID /0000-0002-9301-1803/work/203067747
ORCID /0000-0003-1054-8080/work/203071228