Genomic characterization of Legionella pneumophila serogroup 1 ST901 isolates responsible for recurrent travel-associated Legionnaires' disease cases and clusters

Research output: Contribution to journal › Research article › Contributed › peer-review

Contributors

  • Maria Luisa Ricci - , European Society of Clinical Microbiology and Infectious Diseases (Author)
  • Silvia Fillo - , Defense Institute for Biomedical Sciences (Author)
  • Francesco Giordani - , CNR - Institute for system analysis and computer science "Antonio Ruberti" (IASI) (Author)
  • Andrea Ciammaruconi - , Defense Institute for Biomedical Sciences (Author)
  • Antonietta Girolamo - , Istituto Superiore di Sanita (Author)
  • Anna Anselmo - , Defense Institute for Biomedical Sciences (Author)
  • Anella Monte - , Defense Institute for Biomedical Sciences (Author)
  • Massimo Mentasti - , Cardiff & Vale University Health Board (Author)
  • Valerio Cusimano - , CNR - Institute for system analysis and computer science "Antonio Ruberti" (IASI) (Author)
  • Maria Grazia Caporali - , Istituto Superiore di Sanita (Author)
  • Maria Cristina Rota - , Istituto Superiore di Sanita (Author)
  • Markus Petzold - , Institute of Medical Microbiology and Virology, European Society of Clinical Microbiology and Infectious Diseases (Author)
  • BaharaK Afshar - , UK Health Security Agency (UKHSA) (Author)
  • Florigio Lista - , Defense Institute for Biomedical Sciences (Author)
  • Christian Luck - , Institute of Medical Microbiology and Virology, European Society of Clinical Microbiology and Infectious Diseases (Author)
  • Maria Scaturro - , European Society of Clinical Microbiology and Infectious Diseases (Author)

Abstract

Cases of travel-associated Legionnaires' disease (TALD) are frequently reported in Italy. From 1987 to 2021, 61 cases of TALD were linked to 22 hotels in a municipality in northern Italy. Legionella pneumophila serogroup 1 (Lp1) strains isolated from both patients and hotel water systems were identified as sequence type (ST) 901, a genotype rarely associated with travel-related infections in Italy or elsewhere. Whole-genome sequencing was used to analyze 41 isolates, and phylogenetic relationships were inferred by core genome multilocus sequence typing (cgMLST), single nucleotide polymorphisms (SNP) and pangenome analyses. The Lp ST901 isolates were found to form a clade characterized by some accessory genomic islands (AGI) already described in other epidemic strains, such as Alcoy, Corby, Paris and Philadelphia; other islands, containing either transposase/recombinase or transcriptional regulator factors or Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-cas systems, were specific to Lp ST901. Lp ST901 also appears to have undergone possible recombination with other strains, such as Lp ST47 (Lorraine strain). Additionally, CRISPR-Cas systems may have contributed to the protection of Lp ST901 from external dangers, while the colonized hotel water systems may have provided an ideal environmental protective niche. Our findings highlight that Lp ST901 has public health significance and deserves attention in Legionnaires' disease surveillance and risk assessment.

Details

Original languageEnglish
Pages (from-to)178-189
Number of pages12
JournalPathogens and global health
Volume120
Issue number3
Early online date14 Jan 2026
Publication statusPublished - May 2026
Peer-reviewedYes

External IDs

Scopus 105027579807
ORCID /0000-0001-6622-5550/work/219976867

Keywords

Sustainable Development Goals

Keywords

  • CRISPR-cas systems, Legionella pneumophila, SNPs, ST901, cgMLST, genomic islands, pangenome