From Heterogeneity to Uniformity: A Metadata-Driven ETL Process for Transforming FHIR Data into OMOP CDM
Research output: Contribution to book/Conference proceedings/Anthology/Report › Chapter in book/Anthology/Report › Contributed › peer-review
Contributors
Abstract
Heterogeneous data formats complicate unified analysis in multisite clinical studies. Standardizing data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) requires Extract-Transform-Load (ETL) processes, which are complex and time-consuming to develop, especially with different source data specifications. The aim of our work is to develop a generalized, metadata-driven ETL process to transform Fast Healthcare Interoperability Resources (FHIR) into OMOP CDM. In this paper, we present first results of the developed metadata-driven ETL process on the example of two different Patient FHIR specifications.
Details
| Original language | English |
|---|---|
| Title of host publication | Envisioning the Future of Health Informatics and Digital Health |
| Pages | 290-291 |
| Number of pages | 2 |
| Volume | 323 |
| ISBN (electronic) | 978-1-64368-590-8 |
| Publication status | Published - 8 Apr 2025 |
| Peer-reviewed | Yes |
Publication series
| Series | Studies in health technology and informatics |
|---|---|
| Volume | 323 |
| ISSN | 0926-9630 |
External IDs
| Scopus | 105003149122 |
|---|---|
| ORCID | /0000-0002-5002-2676/work/184442373 |
| ORCID | /0000-0002-9888-8460/work/184442540 |
Keywords
Keywords
- Electronic Health Records/standards, Health Information Interoperability/standards, Humans, Metadata/standards, Outcome Assessment, Health Care/standards