ECF σ factors with regulatory extensions: the one-component systems of the σ universe
Research output: Contribution to journal › Review article › Contributed › peer-review
Contributors
Abstract
The σ subunit of the bacterial RNA polymerase determines promoter specificity. The extracytoplasmic function σ factors (ECFs) represent the most abundant and diverse group of alternative σ factors and are present in the vast majority of bacterial genomes. Typically, ECFs are regulated by anti-σ factors that sequester their cognate ECFs, thereby preventing their interaction with the RNA polymerase. Beyond these ECF paradigms, a number of distinct modes of regulation have been proposed and experimentally investigated. Regulatory extensions represent one such alternative mechanism of ECF regulation that can be found in 18 phylogenetically distinct ECF groups. Here, the σ factors contain additional domains that are fused to the ECF core domains and are involved in stimulus perception and modulation of σ factor activity. We will summarize the current state of knowledge on regulating ECF activity by C-terminal extensions. We will also discuss newly identified ECF groups containing either N- or C-terminal extensions and propose possible mechanisms by which these extensions have been generated and affect ECF σ factor activity. Based on their modular architecture and the resulting physical connection between stimulus perception and transcriptional output, these ECFs are analogous to one-component systems, the primary mechanism of bacterial signal transduction.
Details
Original language | English |
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Pages (from-to) | 399-409 |
Number of pages | 11 |
Journal | Molecular microbiology |
Volume | 112 |
Issue number | 2 |
Publication status | Published - Aug 2019 |
Peer-reviewed | Yes |
External IDs
Scopus | 85067336610 |
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Keywords
Keywords
- Bacteria/enzymology, Bacterial Proteins/genetics, DNA-Directed RNA Polymerases/genetics, Extracellular Space/genetics, Gene Expression Regulation, Bacterial, Sigma Factor/genetics, Signal Transduction