Diversity of laccase genes from basidiomycetes in a forest soil

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Patricia Luis - , Friedrich Schiller University Jena, INRAE - National Institute of Agricultural Research (Author)
  • Grit Walther - , Friedrich Schiller University Jena (Author)
  • Harald Kellner - , Friedrich Schiller University Jena (Author)
  • Francis Martin - , INRAE - National Institute of Agricultural Research (Author)
  • François Buscot - , Friedrich Schiller University Jena, Leipzig University (Author)

Abstract

Fungal oxidative exo-enzymes lacking substrate specificity play a central role in the cycling of soil organic matter. Due to their broad ecological impact and available knowledge of their gene structure, laccases appeared to be appropriate markers to monitor fungi with this kind of oxidative potential in soils. A degenerate PCR-primer pair Cu1F/Cu2R, specific for basidiomycetes, was designed to assess directly the diversity of laccase genes in soils. PCR amplification of mycelial cultures and fruit-bodies of a wide spectrum of basidiomycetes, covering all functional groups (saprophytes, symbionts, and pathogens), produced multiple DNA fragments around 200 bp. A neighbor-joining tree analysis of the PCR-amplified laccase sequences showed a clear species-specificity, but also revealed that most fungal taxa possess several laccase genes showing a large sequence divergence. This sequence diversity precluded the systematic attribution of amplified laccase of unknown origin to specific taxa. Amplification of laccase sequences from DNA, extracted from a brown (moder) forest soil, showed a specific distribution of laccase genes and of the corresponding fungal species in the various soil horizons (Oh, Ah, Bv). The most organic Oh-horizon displayed the highest gene diversity. Saprophytic fungi appeared to be less widespread through the soil horizons and displayed a higher diversity of laccase genes than the mycorrhizal ones.

Details

Original languageEnglish
Pages (from-to)1025-1036
Number of pages12
JournalSoil Biology and Biochemistry
Volume36
Issue number7
Publication statusPublished - Jul 2004
Peer-reviewedYes
Externally publishedYes

Keywords

ASJC Scopus subject areas

Keywords

  • Basidiomycetes, Degenerate PCR primers, Gene diversity, Laccases, Soil DNA