Developing open-source software for bioimage analysis: Opportunities and challenges

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

Abstract

Fast-paced innovations in imaging have resulted in single systems producing exponential amounts of data to be analyzed. Computational methods developed in computer science labs have proven to be crucial for analyzing these data in an unbiased and efficient manner, reaching a prominent role in most microscopy studies. Still, their use usually requires expertise in bioimage analysis, and their accessibility for life scientists has therefore become a bottleneck. Open-source software for bioimage analysis has developed to disseminate these computational methods to a wider audience, and to life scientists in particular. In recent years, the influence of many open-source tools has grown tremendously, helping tens of thousands of life scientists in the process. As creators of successful open-source bioimage analysis software, we here discuss the motivations that can initiate development of a new tool, the common challenges faced, and the characteristics required for achieving success.

Details

Original languageEnglish
Article number302
JournalF1000Research
Volume10
Publication statusPublished - 19 Apr 2021
Peer-reviewedYes

External IDs

Scopus 85108740259
PubMed 34249339
unpaywall 10.12688/f1000research.52531.1
Mendeley 8f413d05-148e-398a-ace0-f006b296db09

Keywords