CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting

Research output: Contribution to journalShort survey/ReviewContributedpeer-review

Contributors

  • CoNIC Challenge Consortium - (Author)
  • University of Warwick
  • Histofy Ltd
  • Swiss Federal Institute of Technology Lausanne (EPFL)
  • The University of Hong Kong
  • Tencent
  • Sichuan University
  • Tsinghua University
  • Max Delbrück Center for Molecular Medicine (MDC)
  • Humboldt University of Berlin
  • Charité – Universitätsmedizin Berlin
  • University of Bern
  • University of Cambridge
  • Chinese University of Hong Kong
  • Softsensor.ai
  • PRR.ai
  • Arontier Co.
  • Mohamed Bin Zayed University of Artificial Intelligence
  • Université de Tours
  • University of Strasbourg
  • French National Centre for Scientific Research (CNRS)
  • INSERM - Institut national de la santé et de la recherche médicale
  • Karlsruhe Institute of Technology
  • South China University of Technology
  • University Hospitals Coventry and Warwickshire NHS Trust

Abstract

Nuclear detection, segmentation and morphometric profiling are essential in helping us further understand the relationship between histology and patient outcome. To drive innovation in this area, we setup a community-wide challenge using the largest available dataset of its kind to assess nuclear segmentation and cellular composition. Our challenge, named CoNIC, stimulated the development of reproducible algorithms for cellular recognition with real-time result inspection on public leaderboards. We conducted an extensive post-challenge analysis based on the top-performing models using 1,658 whole-slide images of colon tissue. With around 700 million detected nuclei per model, associated features were used for dysplasia grading and survival analysis, where we demonstrated that the challenge's improvement over the previous state-of-the-art led to significant boosts in downstream performance. Our findings also suggest that eosinophils and neutrophils play an important role in the tumour microevironment. We release challenge models and WSI-level results to foster the development of further methods for biomarker discovery.

Details

Original languageEnglish
Article number103047
JournalMedical Image Analysis
Volume92
Publication statusPublished - Feb 2024
Peer-reviewedYes
Externally publishedYes

External IDs

PubMed 38157647
ORCID /0000-0002-7780-9057/work/176863471