Computational study of remodeling in a nucleosomal array

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Raoul D. Schram - , Leiden University (Author)
  • Henrike Klinker - , Ludwig Maximilian University of Munich (Author)
  • Peter B. Becker - , Ludwig Maximilian University of Munich (Author)
  • Helmut Schiessel - , Leiden University (Author)

Abstract

Abstract: Chromatin remodeling complexes utilize the energy of ATP hydrolysis to change the packing state of chromatin, e.g. by catalysing the sliding of nucleosomes along DNA. Here we present simple models to describe experimental data of changes in DNA accessibility along a synthetic, repetitive array of nucleosomes during remodeling by the ACF enzyme or its isolated ATPase subunit, ISWI. We find substantial qualitative differences between the remodeling activities of ISWI and ACF. To understand better the observed behavior for the ACF remodeler, we study more microscopic models of nucleosomal arrays. Graphical abstract: [Figure not available: see fulltext.]

Details

Original languageEnglish
Article number85
JournalEuropean Physical Journal E
Volume38
Issue number8
Publication statusPublished - 8 Aug 2015
Peer-reviewedYes
Externally publishedYes

External IDs

PubMed 26248702

Keywords

Keywords

  • Living systems: Biological Matter