Comprehensive analysis of CNOT3-related neurodevelopmental disorders: phenotypic and genotypic characterization

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Camille Engel - , Université de Bourgogne (Author)
  • Michaela Rendek - , University Of Franche-comté (Author)
  • Jessica Assoumani - , University Of Franche-comté (Author)
  • Emanuela Argilli - , UCSF Weill Institute for Neuroscience (Author)
  • Francesca Ariani - , Siena University Hospital (Author)
  • Anne-Laude Avice-Denizet - , University Of Franche-comté (Author)
  • Emilia K Bijlsmaa - , Leiden University Medical Centre (LUMC) (Author)
  • Pierre Blanc - , GCS SeqOIA (Author)
  • Lucia Pia Bruno - , University of Milan - Bicocca (Author)
  • Bert Callewaert - , Ghent University Hospital (Author)
  • Valeria Capra - , IRCCS Istituto Giannina Gaslini - Genova (Author)
  • Michele Carullo - , A. Gemelli University Hospital Foundation IRCCS (Author)
  • Bertrand Chesneau - , Hopital Purpan (Author)
  • Sandra Coppens - , Erasmus Hospital - Brussels University Clinics (Author)
  • Cynthia Curry - , University of California at San Francisco (Author)
  • Breanne Dale - , Hamilton Health Sciences (Author)
  • Eric Dahlen - , University Of Franche-comté (Author)
  • Andrée Delahaye-Duriez - , Neurodiderot (Author)
  • Anne-Sophie Denommé-Pichon - , Dijon University Hospital (CHU Dijon Bourgogne) (Author)
  • Bénédicte Demeer - , CHU Amiens-Picardie (Author)
  • Lenka Dvořáková - , University Hospital Motol (Author)
  • Jan Fischer - , Institute of Clinical Genetics, University Hospital Carl Gustav Carus Dresden (Author)
  • David Geneviève - , CHU Montpellier (Author)
  • Thea Giacomini - , IRCCS Istituto Giannina Gaslini - Genova (Author)
  • Mette M Handrup - , Aarhus University Hospital (AUH) (Author)
  • Delphine Heron - , Pitié-Salpêtrière Hospital (Author)
  • Irina Hüning - , University Hospital Schleswig-Holstein - Campus Lübeck (Author)
  • Michelle Iacomino - , IRCCS Istituto Giannina Gaslini - Genova (Author)
  • Bertrand Isidor - , CHU de Nantes (Author)
  • Boris Keren - , Pitié-Salpêtrière Hospital (Author)
  • Stanislav Kmoch - , Charles University Prague (Author)
  • David A Koolen - , Radboud University Medical Center (Author)
  • Andrea Kübler - , Institute of Clinical Genetics, University Hospital Carl Gustav Carus Dresden (Author)
  • Jana Laštůvková - , Regional Public Health Authority for Ustecky Kraj (Author)
  • Carolyn Le - , UCSF Weill Institute for Neuroscience (Author)
  • Jonathan Levy - , Public Assistance - Paris Hospitals (Author)
  • Caterina Lo Rizzo - , Siena University Hospital (Author)
  • Silvia Maitz - , Ente Ospedaliero Cantonale (EOC) (Author)
  • Sandrine Marlin - , Imagine Institute (Author)
  • Cyril Mignot - , Pitié-Salpêtrière Hospital (Author)
  • Ghayda Mirzaa - , University of Washington (Author)
  • Inga Nagel - , University Hospital Schleswig-Holstein Campus Kiel (Author)
  • Sebastian Neuens - , University Hospital Brussels (Author)
  • Lenka Nosková - , Charles University Prague (Author)
  • Emily Pao - , Children's Hospital and Regional Medical Center Seattle (Author)
  • Anna Pecková - , Regional Public Health Authority for Ustecky Kraj (Author)
  • Julie Plaisancie - , Hopital Purpan (Author)
  • Joseph Porrmann - , Institute of Clinical Genetics, University Hospital Carl Gustav Carus Dresden (Author)
  • Flavia Privitera - , IRCCS Fondazione Stella Maris (Author)
  • André Reis - , University Hospital at the Friedrich-Alexander University Erlangen-Nürnberg (Author)
  • Alessandra Renieri - , University of Siena (Author)
  • Marlène Rio - , Necker–Enfants Malades Hospital, Imagine Institute (Author)
  • Alyssa Rippert - , Children's Hospital of Philadelphia (CHOP) (Author)
  • Lukáš Ryba - , University Hospital Motol (Author)
  • Marcello Scala - , IRCCS Istituto Giannina Gaslini - Genova (Author)
  • Jolanda H Schieving - , Radboud University Medical Center (Author)
  • Elliott H Sherr - , UCSF Weill Institute for Neuroscience (Author)
  • Andrew Shuen - , Hospital for Sick Children (Author)
  • Richard Sidlow - , Valley Children's Hospital (Author)
  • Thomas Smol - , University Hospital of Lille (Author)
  • Julie Soblet - , Université libre de Bruxelles (ULB) (Author)
  • Pasquale Striano - , IRCCS Istituto Giannina Gaslini - Genova (Author)
  • Mohnish Suri - , Nottingham University Hospitals NHS Trust (Author)
  • Hannes Syryn - , Ghent University (Author)
  • Frédéric Tran Mau-Them - , Dijon University Hospital (CHU Dijon Bourgogne) (Author)
  • Andre M Travessa - , University of Lisbon (Author)
  • Julien Van Gils - , University Hospital of Bordeaux (Author)
  • Georgia Vasileiou - , University Hospital at the Friedrich-Alexander University Erlangen-Nürnberg (Author)
  • Jolijn J A Verseput - , Radboud University Medical Center (Author)
  • Catheline Vilain - , University Hospital Brussels (Author)
  • Catherine Vincent-Delorme - , University Hospital of Lille (Author)
  • Emílie Vyhnálková - , University Hospital Motol (Author)
  • Emma L Wakeling - , Great Ormond Street Hospital for Children NHS Trust (Author)
  • Pia Zacher - , Epilepsy Center Kleinwachau (Author)
  • Federico Zara - , IRCCS Istituto Giannina Gaslini - Genova (Author)
  • Paul Kuentz - , University Of Franche-comté (Author)
  • Juliette Piard - , Université de Bourgogne (Author)

Abstract

The CCR4-NOT complex, crucial in gene expression regulation, includes CNOT3, a subunit linked to neurodevelopmental disorders when mutated. This study investigates 51 patients from 42 families with heterozygous CNOT3 variants, aiming to expand the understanding of CNOT3-related neurodevelopmental disorders and explore genotype-phenotype correlations. Patients originated from various countries, reflecting the disorder's global significance. All patients exhibited developmental delays, particularly in the language area. Intellectual disability was found in 87% of patients and was typically mild to moderate. Behavioral issues, including autism spectrum disorders and attention deficits, were common, affecting over half of the patients. Dysmorphic features were highlighted and may help establishing the diagnosis. Epilepsy was uncommon (10%). Twenty-eight novel variants were identified, including missense, nonsense, frameshift, intronic variations and a deletion of 12 exons. Missense variants clustered at the N- and C-terminal regions of the protein, indicating critical functional roles. No clear genotype-phenotype correlation was observed, suggesting that all identified variants resulted in a loss-of-function effect. Finally, this work delineates the clinical and molecular spectrum of CNOT3-related disorders thanks to an in-depth characterization of a large cohort. Further research will be necessary to understand the functional consequences of the variants and enhance patient long-term outcomes.

Details

Original languageEnglish
Pages (from-to)989-996
Number of pages8
JournalEuropean journal of human genetics : EJHG
Volume33
Issue number8
Publication statusPublished - Aug 2025
Peer-reviewedYes

External IDs

Scopus 105008909187

Keywords

Keywords

  • Humans, Male, Female, Child, Transcription Factors/genetics, Neurodevelopmental Disorders/genetics, Child, Preschool, Adolescent, Repressor Proteins/genetics, Phenotype, Intellectual Disability/genetics, Adult, Infant, Mutation, Missense