Classification of tissue regions in histopathological images: Comparison between pre-trained convolutional neural networks and local binary patterns variants

Research output: Contribution to book/Conference proceedings/Anthology/ReportChapter in book/Anthology/ReportContributedpeer-review

Contributors

  • Jakob N. Kather - , RWTH Aachen University (Author)
  • Raquel Bello-Cerezo - , University of Perugia (Author)
  • Francesco Di Maria - , University of Perugia (Author)
  • Gabi W. van Pelt - , Leiden University (Author)
  • Wilma E. Mesker - , Leiden University (Author)
  • Niels Halama - , Heidelberg University  (Author)
  • Francesco Bianconi - , University of Perugia (Author)

Abstract

The identification of tissue regions within histopathological images represents a fundamental step for diagnosis, patient stratification and follow-up. However, the huge amount of image data made available by the ever improving whole-slide imaging devices gives rise to a bottleneck in manual, microscopy-based evaluation. Furthermore, manual procedures generally show a significant intra- and/or inter-observer variability. In this scenario the objective of this chapter is to investigate the effectiveness of image features from last-generation, pre-trained convolutional networks against variants of Local Binary Patterns for classifying tissue sub-regions into meaningful classes such as epithelium, stroma, lymphocytes and necrosis. Experimenting with seven datasets of histopathological images we show that both classes of methods can be quite effective for the task, but with a noticeable superiority of descriptors based on convolutional neural networks. In particular, we show that these can be seamlessly integrated with standard classifiers (e.g. Support Vector Machines) to attain overall discrimination accuracy between 95 and 99%.

Details

Original languageEnglish
Title of host publicationDeep Learners and Deep Learner Descriptors for Medical Applications
EditorsLoris Nanni, Sheryl Brahnam, Rick Brattin, Stefano Ghidoni, Lakhmi C. Jain
PublisherSpringer
Pages95-115
Number of pages21
ISBN (electronic)978-3-030-42750-4
ISBN (print)978-3-030-42748-1
Publication statusPublished - 2020
Peer-reviewedYes
Externally publishedYes

Publication series

SeriesIntelligent Systems Reference Library
Volume186
ISSN1868-4394