Cascaded Cross-Attention Networks for Data-Efficient Whole-Slide Image Classification Using Transformers
Research output: Contribution to book/Conference proceedings/Anthology/Report › Conference contribution › Contributed › peer-review
Contributors
Abstract
Whole-Slide Imaging allows for the capturing and digitization of high-resolution images of histological specimen. An automated analysis of such images using deep learning models is therefore of high demand. The transformer architecture has been proposed as a possible candidate for effectively leveraging the high-resolution information. Here, the whole-slide image is partitioned into smaller image patches and feature tokens are extracted from these image patches. However, while the conventional transformer allows for a simultaneous processing of a large set of input tokens, the computational demand scales quadratically with the number of input tokens and thus quadratically with the number of image patches. To address this problem we propose a novel cascaded cross-attention network (CCAN) based on the cross-attention mechanism that scales linearly with the number of extracted patches. Our experiments demonstrate that this architecture is at least on-par with and even outperforms other attention-based state-of-the-art methods on two public datasets: On the use-case of lung cancer (TCGA NSCLC) our model reaches a mean area under the receiver operating characteristic (AUC) of 0.970 ± 0.008 and on renal cancer (TCGA RCC) reaches a mean AUC of 0.985 ± 0.004. Furthermore, we show that our proposed model is efficient in low-data regimes, making it a promising approach for analyzing whole-slide images in resource-limited settings. To foster research in this direction, we make our code publicly available on GitHub: https://github.com/FirasGit/cascaded_cross_attention.
Details
Original language | English |
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Title of host publication | Machine Learning in Medical Imaging |
Editors | Xiaohuan Cao, Xi Ouyang, Xuanang Xu, Islem Rekik, Zhiming Cui |
Publisher | Springer Science and Business Media B.V. |
Pages | 417-426 |
Number of pages | 10 |
ISBN (electronic) | 978-3-031-45676-3 |
ISBN (print) | 978-3-031-45675-6 |
Publication status | Published - 2024 |
Peer-reviewed | Yes |
Publication series
Series | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) |
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Volume | 14349 LNCS |
ISSN | 0302-9743 |
Workshop
Title | 14th International Workshop on Machine Learning in Medical Imaging |
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Abbreviated title | MLMI 2023 |
Conference number | 14 |
Duration | 8 October 2023 |
Location | Vancouver Convention Center |
City | Vancouver |
Country | Canada |
Keywords
Sustainable Development Goals
ASJC Scopus subject areas
Keywords
- Computational Pathology, Transformers, Whole-Slide Images