A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

Research output: Contribution to journalResearch articleContributedpeer-review

Contributors

  • Jianxiao Song - , Northwestern Polytechnical University Xian, University of Copenhagen (Author)
  • Uli Klümper - , Technische Universität Dresden, Institute for Hydrobiology, Environment and Sustainability Institute, University of Exeter (Author)
  • Leise Riber - , University of Copenhagen (Author)
  • Arnaud Dechesne - , Technical University of Denmark (Author)
  • Barth F. Smets - , Technical University of Denmark (Author)
  • Søren J. Sørensen - , University of Copenhagen (Author)
  • Kristian K. Brandt - , University of Copenhagen (Author)

Abstract

Stressors like metals or antibiotics can affect bacterial community permissiveness for plasmid uptake, but there is little knowledge about long-term effects of such stressors on the evolution of community permissiveness. We assessed the effect of more than 90 years of soil Cu contamination on bacterial community permissiveness (i.e. uptake ability) toward a gfp-tagged IncP-1 plasmid (pKJK5) introduced via an Escherichia coli donor. Plasmid transfer events from the donor to the recipient soil bacterial community were quantified and transconjugants were subsequently isolated by fluorescence activated cell sorting and identified by 16S rRNA gene amplicon sequencing. Transfer frequency of plasmid pKJK5 was reduced in bacterial communities extracted from highly Cu contaminated (4526 mg kg-1) soil compared to corresponding communities extracted from moderately (458 mg kg-1) Cu contaminated soil and a low Cu reference soil (15 mg kg-1). The taxonomic composition of the transconjugal pools showed remarkable similarities irrespective of the degree of soil Cu contamination and despite contrasting compositions of the extracted recipient communities and the original soil communities. Permissiveness assessed at the level of individual operational taxonomic units (OTUs; 16S rRNA gene 97% sequence similarity threshold) was only slightly affected by soil Cu level and high replicate variability of OTU-level permissiveness indicated a role of stochastic events in IncP-1 plasmid transfer or strain-to-strain permissiveness variability.

Details

Original languageEnglish
Article numberfiaa200
JournalFEMS Microbiology Ecology
Volume96
Issue number11
Publication statusPublished - 1 Nov 2020
Peer-reviewedYes

External IDs

PubMed 33002118
ORCID /0000-0002-4169-6548/work/142247355

Keywords

Keywords

  • Conjugal plasmid transfer, Copper, Horizontal gene transfer, Plasmid permissiveness, Soil bacterial community, Transconjugants