Transcription organizes euchromatin via microphase separation

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • Lennart Hilbert - , Zentrum für Systembiologie Dresden (CSBD), Max Planck Institute of Molecular Cell Biology and Genetics, Max-Planck-Institut für Physik komplexer Systeme, Karlsruher Institut für Technologie (Autor:in)
  • Yuko Sato - , Tokyo Institute of Technology (Autor:in)
  • Ksenia Kuznetsova - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Tommaso Bianucci - , Max Planck Institute of Molecular Cell Biology and Genetics, Max-Planck-Institut für Physik komplexer Systeme (Autor:in)
  • Hiroshi Kimura - , Tokyo Institute of Technology (Autor:in)
  • Frank Jülicher - , Zentrum für Systembiologie Dresden (CSBD), Max-Planck-Institut für Physik komplexer Systeme, Technische Universität Dresden, Exzellenzcluster PoL: Physik des Lebens (Autor:in)
  • Alf Honigmann - , Exzellenzcluster PoL: Physik des Lebens, Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Vasily Zaburdaev - , Zentrum für Systembiologie Dresden (CSBD), Max-Planck-Institut für Physik komplexer Systeme, Friedrich-Alexander-Universität Erlangen-Nürnberg (Autor:in)
  • Nadine L. Vastenhouw - , Max Planck Institute of Molecular Cell Biology and Genetics, Université de Lausanne (Autor:in)

Abstract

In eukaryotes, DNA is packed inside the cell nucleus in the form of chromatin, which consists of DNA, proteins such as histones, and RNA. Euchromatin, which is permissive for transcription, is spatially organized into transcriptionally inactive domains interspersed with pockets of transcriptional activity. While transcription and RNA have been implicated in euchromatin organization, it remains unclear how their interplay forms and maintains transcription pockets. Here we combine theory and experiment to analyze the dynamics of euchromatin organization as pluripotent zebrafish cells exit mitosis and begin transcription. We show that accumulation of RNA induces formation of transcription pockets which displace transcriptionally inactive chromatin. We propose that the accumulating RNA recruits RNA-binding proteins that together tend to separate from transcriptionally inactive euchromatin. Full phase separation is prevented because RNA remains tethered to transcribed euchromatin through RNA polymerases. Instead, smaller scale microphases emerge that do not grow further and form the typical pattern of euchromatin organization.

Details

OriginalspracheEnglisch
Aufsatznummer1360
FachzeitschriftNature communications
Jahrgang12
Ausgabenummer1
PublikationsstatusVeröffentlicht - 1 Dez. 2021
Peer-Review-StatusJa

Externe IDs

PubMed 33649325
ORCID /0000-0003-0475-3790/work/161889535