An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • Ralf Kittler - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Gabriele Putz - (Autor:in)
  • Laurence Pelletier - (Autor:in)
  • Ina Poser - (Autor:in)
  • Anne-Kristin Heninger - , Universitäts KrebsCentrum Dresden (Autor:in)
  • David Drechsel - (Autor:in)
  • Steffi Fischer - (Autor:in)
  • Irena Konstantinova - (Autor:in)
  • Bianca Habermann - (Autor:in)
  • Hannes Grabner - (Autor:in)
  • Marie-Laure Yaspo - (Autor:in)
  • Heinz Himmelbauer - (Autor:in)
  • Bernd Korn - (Autor:in)
  • Karla Neugebauer - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Maria Teresa Pisabarro - , Strukturelle Bioinformatik (FoG), Biotechnologisches Zentrum (BIOTEC), Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Frank Buchholz - , Universitäts KrebsCentrum Dresden, Medizinische Systembiologie, Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)

Abstract

RNA interference (RNAi) is an evolutionarily conserved defence mechanism whereby genes are specifically silenced through degradation of messenger RNAs; this process is mediated by homologous double-stranded (ds)RNA molecules. In invertebrates, long dsRNAs have been used for genome-wide screens and have provided insights into gene functions. Because long dsRNA triggers a nonspecific interferon response in many vertebrates, short interfering (si)RNA or short hairpin (sh)RNAs must be used for these organisms to ensure specific gene silencing. Here we report the generation of a genome-scale library of endoribonuclease-prepared short interfering (esi)RNAs from a sequence-verified complementary DNA collection representing 15,497 human genes. We used 5,305 esiRNAs from this library to screen for genes required for cell division in HeLa cells. Using a primary high-throughput cell viability screen followed by a secondary high content videomicroscopy assay, we identified 37 genes required for cell division. These include several splicing factors for which knockdown generates mitotic spindle defects. In addition, a putative nuclear-export terminator was found to speed up cell proliferation and mitotic progression after knockdown. Thus, our study uncovers new aspects of cell division and establishes esiRNA as a versatile approach for genomic RNAi screens in mammalian cells.

Details

OriginalspracheEnglisch
Seiten (von - bis)1036-1040
Seitenumfang5
FachzeitschriftNature
Jahrgang432
Ausgabenummer7020
PublikationsstatusVeröffentlicht - 23 Dez. 2004
Peer-Review-StatusJa

Externe IDs

Scopus 19944367565

Schlagworte

Schlagwörter

  • Cell Division/genetics, Cell Proliferation, Cell Survival, Cytokinesis/genetics, Endoribonucleases/metabolism, Gene Library, Genes, Essential/genetics, Genomics/methods, HeLa Cells, Humans, Microscopy, Video, Mitosis/genetics, Molecular Sequence Data, Phenotype, RNA Interference, RNA, Small Interfering/genetics, Spindle Apparatus/physiology

Bibliotheksschlagworte