Serving many at once: How a database approach can create unity in dynamical ecosystem modelling

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • Wolf M. Mooij - , Nederlands Instituut voor Ecologie (NIOO-KNAW), Wageningen University & Research (WUR) (Autor:in)
  • Robert J. Brederveld - , Witteveen+Bos (Autor:in)
  • Jeroen J.M. de Klein - , Wageningen University & Research (WUR) (Autor:in)
  • Don L. DeAngelis - , University of Miami (Autor:in)
  • Andrea S. Downing - , Stockholm University (Autor:in)
  • Michiel Faber - , Witteveen+Bos (Autor:in)
  • Daan J. Gerla - , Wageningen University & Research (WUR), Royal Netherlands Institute for Sea Research - NIOZ (Autor:in)
  • Matthew R. Hipsey - , University of Western Australia (Autor:in)
  • Jochem 't Hoen - , Wageningen University & Research (WUR) (Autor:in)
  • Jan H. Janse - , PBL Netherlands Environmental Assessment Agency (Autor:in)
  • Annette B.G. Janssen - , Nederlands Instituut voor Ecologie (NIOO-KNAW), Wageningen University & Research (WUR) (Autor:in)
  • Michel Jeuken - , Deltares (Autor:in)
  • Bob W. Kooi - , Vrije Universiteit Amsterdam (VU) (Autor:in)
  • Betty Lischke - , Universität Potsdam (Autor:in)
  • Thomas Petzoldt - , Professur für Limnologie (Gewässerökologie) (Autor:in)
  • Leo Postma - , PBL Netherlands Environmental Assessment Agency (Autor:in)
  • Sebastiaan A. Schep - , Witteveen+Bos (Autor:in)
  • Huub Scholten - , Wageningen University & Research (WUR) (Autor:in)
  • Sven Teurlincx - , Nederlands Instituut voor Ecologie (NIOO-KNAW) (Autor:in)
  • Christophe Thiange - , PBL Netherlands Environmental Assessment Agency (Autor:in)
  • Dennis Trolle - , Universität Aarhus (Autor:in)
  • Anne A. van Dam - , IHE Delft Institute for Water Education (Autor:in)
  • Luuk P.A. van Gerven - , Nederlands Instituut voor Ecologie (NIOO-KNAW), Wageningen University & Research (WUR) (Autor:in)
  • Egbert H. van Nes - , Wageningen University & Research (WUR) (Autor:in)
  • Jan J. Kuiper - , Nederlands Instituut voor Ecologie (NIOO-KNAW), Wageningen University & Research (WUR) (Autor:in)

Abstract

Simulation modelling in ecology is a field that is becoming increasingly compartmentalized. Here we propose a Database Approach To Modelling (DATM) to create unity in dynamical ecosystem modelling with differential equations. In this approach the storage of ecological knowledge is independent of the language and platform in which the model will be run. To create an instance of the model, the information in the database is translated and augmented with the language and platform specifics. This process is automated so that a new instance can be created each time the database is updated. We describe the approach using the simple Lotka-Volterra model and the complex ecosystem model for shallow lakes PCLake, which we automatically implement in the frameworks OSIRIS, GRIND for MATLAB, ACSL, R, DUFLOW and DELWAQ. A clear advantage of working in a database is the overview it provides. The simplicity of the approach only adds to its elegance.

Details

OriginalspracheEnglisch
Seiten (von - bis)266-273
Seitenumfang8
FachzeitschriftEnvironmental Modelling and Software
Jahrgang61
PublikationsstatusVeröffentlicht - 1 Nov. 2014
Peer-Review-StatusJa

Externe IDs

Scopus 84908097388
ORCID /0000-0002-4951-6468/work/142256747

Schlagworte

Forschungsprofillinien der TU Dresden

Schlagwörter

  • modelling framework, programming language, differential equation, database approach to modelling, DATM, community-based modelling