Recalibrating single-study effect sizes using hierarchical Bayesian models

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • Zhipeng Cao - , Shanghai Xuhui Mental Health Center (Autor:in)
  • Matthew McCabe - , University of Vermont (Autor:in)
  • Peter Callas - , University of Vermont (Autor:in)
  • Renata B Cupertino - , University of Vermont (Autor:in)
  • Jonatan Ottino-González - , University of Vermont (Autor:in)
  • Alistair Murphy - , University of Vermont (Autor:in)
  • Devarshi Pancholi - , University of Vermont (Autor:in)
  • Nathan Schwab - , University of Vermont (Autor:in)
  • Orr Catherine - , Swinburne University of Technology (Autor:in)
  • Kent Hutchison - , University of Colorado Boulder (Autor:in)
  • Janna Cousijn - , Erasmus University Rotterdam (Autor:in)
  • Alain Dagher - , McGill University (Autor:in)
  • John J Foxe - , University of Rochester School of Medicine and Dentistry (Autor:in)
  • Anna E Goudriaan - , University of Amsterdam (Autor:in)
  • Robert Hester - , University of Melbourne (Autor:in)
  • Chiang-Shan R Li - , Yale University (Autor:in)
  • Wesley K Thompson - , Laureate Institute for Brain Research (Autor:in)
  • Angelica M Morales - , Oregon Health and Science University (Autor:in)
  • Edythe D London - , University of California at Los Angeles (Autor:in)
  • Valentina Lorenzetti - , Australian Catholic University (Autor:in)
  • Maartje Luijten - , Radboud University Nijmegen (Autor:in)
  • Rocio Martin-Santos - , University of Barcelona (Autor:in)
  • Reza Momenan - , National Institute of Alcohol Abuse and Alcoholism (Autor:in)
  • Martin P Paulus - , Laureate Institute for Brain Research (Autor:in)
  • Lianne Schmaal - , ORYGEN Youth Health (Autor:in)
  • Rajita Sinha - , Yale University (Autor:in)
  • Nadia Solowij - , University of Wollongong (Autor:in)
  • Dan J Stein - , University of Cape Town (Autor:in)
  • Elliot A Stein - , National Institute of Drug Abuse (Autor:in)
  • Anne Uhlmann - , Klinik und Poliklinik für Kinder- und Jugendpsychiatrie (Autor:in)
  • Ruth J van Holst - , University of Amsterdam (Autor:in)
  • Dick J Veltman - , University of Amsterdam (Autor:in)
  • Reinout W Wiers - , University of Amsterdam (Autor:in)
  • Murat Yücel - , Monash University (Autor:in)
  • Sheng Zhang - , Yale University (Autor:in)
  • Patricia Conrod - , CHU Ste Justine Hospital (Autor:in)
  • Scott Mackey - , University of Vermont (Autor:in)
  • ENIGMA Addiction Working Group - (Autor:in)
  • Hugh Garavan - , University of Vermont (Autor:in)

Abstract

INTRODUCTION: There are growing concerns about commonly inflated effect sizes in small neuroimaging studies, yet no study has addressed recalibrating effect size estimates for small samples. To tackle this issue, we propose a hierarchical Bayesian model to adjust the magnitude of single-study effect sizes while incorporating a tailored estimation of sampling variance.

METHODS: We estimated the effect sizes of case-control differences on brain structural features between individuals who were dependent on alcohol, nicotine, cocaine, methamphetamine, or cannabis and non-dependent participants for 21 individual studies (Total cases: 903; Total controls: 996). Then, the study-specific effect sizes were modeled using a hierarchical Bayesian approach in which the parameters of the study-specific effect size distributions were sampled from a higher-order overarching distribution. The posterior distribution of the overarching and study-specific parameters was approximated using the Gibbs sampling method.

RESULTS: The results showed shrinkage of the posterior distribution of the study-specific estimates toward the overarching estimates given the original effect sizes observed in individual studies. Differences between the original effect sizes (i.e., Cohen's d) and the point estimate of the posterior distribution ranged from 0 to 0.97. The magnitude of adjustment was negatively correlated with the sample size (r = -0.27, p < 0.001) and positively correlated with empirically estimated sampling variance (r = 0.40, p < 0.001), suggesting studies with smaller samples and larger sampling variance tended to have greater adjustments.

DISCUSSION: Our findings demonstrate the utility of the hierarchical Bayesian model in recalibrating single-study effect sizes using information from similar studies. This suggests that Bayesian utilization of existing knowledge can be an effective alternative approach to improve the effect size estimation in individual studies, particularly for those with smaller samples.

Details

OriginalspracheEnglisch
Seiten (von - bis)1138193
FachzeitschriftFrontiers in neuroimaging
Jahrgang2
PublikationsstatusVeröffentlicht - 2023
Peer-Review-StatusJa

Externe IDs

PubMedCentral PMC10764546
ORCID /0000-0002-1753-7811/work/151437754