High-resolution cell outline segmentation and tracking from phase-contrast microscopy images

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • M. E. Ambühl - , École Polytechnique Fédérale de Lausanne (Autor:in)
  • C. Brepsant - , École Polytechnique Fédérale de Lausanne (Autor:in)
  • J. J. Meister - , École Polytechnique Fédérale de Lausanne (Autor:in)
  • A. B. Verkhovsky - , École Polytechnique Fédérale de Lausanne (Autor:in)
  • I. F. Sbalzarini - , ETH Zurich (Autor:in)

Abstract

Accurate extraction of cell outlines from microscopy images is essential for analysing the dynamics of migrating cells. Phase-contrast microscopy is one of the most common and convenient imaging modalities for observing cell motility because it does not require exogenous labelling and uses only moderate light levels with generally negligible phototoxicity effects. Automatic extraction and tracking of high-resolution cell outlines from phase-contrast images, however, is difficult due to complex and non-uniform edge intensity. We present a novel image-processing method based on refined level-set segmentation for accurate extraction of cell outlines from high-resolution phase-contrast images. The algorithm is validated on synthetic images of defined noise levels and applied to real image sequences of polarizing and persistently migrating keratocyte cells. We demonstrate that the algorithm is able to reliably reveal fine features in the cell edge dynamics.

Details

OriginalspracheEnglisch
Seiten (von - bis)161-170
Seitenumfang10
FachzeitschriftJournal of Microscopy
Jahrgang245
Ausgabenummer2
PublikationsstatusVeröffentlicht - Feb. 2012
Peer-Review-StatusJa
Extern publiziertJa

Externe IDs

PubMed 21999192
ORCID /0000-0003-4414-4340/work/159608302

Schlagworte

Schlagwörter

  • Cell motility, Cell outline tracking, Cell polarization, Cell shape, Edge detection, Level-set segmentation, Near-optimal thresholding, Phase-contrast microscopy

Bibliotheksschlagworte