Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • Sandra Wiegand - , Radboud University Nijmegen (Autor:in)
  • Mareike Jogler - , Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (Autor:in)
  • Christian Boedeker - , Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (Autor:in)
  • Daniela Pinto - , Professur für Allgemeine Mikrobiologie (Autor:in)
  • John Vollmers - , Karlsruhe Institute of Technology (Autor:in)
  • Elena Rivas-Marín - , Pablo de Olavide University (Autor:in)
  • Timo Kohn - , Radboud University Nijmegen (Autor:in)
  • Stijn H Peeters - , Radboud University Nijmegen (Autor:in)
  • Anja Heuer - , Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (Autor:in)
  • Patrick Rast - , Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (Autor:in)
  • Sonja Oberbeckmann - , Leibniz Institut fur Ostseeforschung Warnemunde (Autor:in)
  • Boyke Bunk - , Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (Autor:in)
  • Olga Jeske - , Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (Autor:in)
  • Anke Meyerdierks - , Max Planck Institute for Marine Microbiology (Autor:in)
  • Julia E Storesund - , University of Bergen (Autor:in)
  • Nicolai Kallscheuer - , Radboud University Nijmegen (Autor:in)
  • Sebastian Lücker - , Radboud University Nijmegen (Autor:in)
  • Olga M Lage - , Lusófona University of Porto (Autor:in)
  • Thomas Pohl - , Technische Universität Bergakademie Freiberg (Autor:in)
  • Broder J Merkel - , Technische Universität Bergakademie Freiberg (Autor:in)
  • Peter Hornburger - , Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (Autor:in)
  • Ralph-Walter Müller - , Freie Hochschule Stuttgart - Seminar für Waldorfpädagogik (Autor:in)
  • Franz Brümmer - , Freie Hochschule Stuttgart - Seminar für Waldorfpädagogik (Autor:in)
  • Matthias Labrenz - , Leibniz Institut fur Ostseeforschung Warnemunde (Autor:in)
  • Alfred M Spormann - , Stanford University (Autor:in)
  • Huub J M Op den Camp - , Radboud University Nijmegen (Autor:in)
  • Jörg Overmann - , Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (Autor:in)
  • Rudolf Amann - , Max Planck Institute for Marine Microbiology (Autor:in)
  • Mike S M Jetten - , Radboud University Nijmegen (Autor:in)
  • Thorsten Mascher - , Professur für Allgemeine Mikrobiologie (Autor:in)
  • Marnix H Medema - , Wageningen University & Research (WUR) (Autor:in)
  • Damien P Devos - , Pablo de Olavide University (Autor:in)
  • Anne-Kristin Kaster - , Karlsruhe Institute of Technology (Autor:in)
  • Lise Øvreås - , University of Bergen (Autor:in)
  • Manfred Rohde - , Helmholtz-Zentrum für Infektionsforschung (HZI) (Autor:in)
  • Michael Y Galperin - , Bethesda (Autor:in)
  • Christian Jogler - , Radboud University Nijmegen (Autor:in)

Abstract

When it comes to the discovery and analysis of yet uncharted bacterial traits, pure cultures are essential as only these allow detailed morphological and physiological characterization as well as genetic manipulation. However, microbiologists are struggling to isolate and maintain the majority of bacterial strains, as mimicking their native environmental niches adequately can be a challenging task. Here, we report the diversity-driven cultivation, characterization and genome sequencing of 79 bacterial strains from all major taxonomic clades of the conspicuous bacterial phylum Planctomycetes. The samples were derived from different aquatic environments but close relatives could be isolated from geographically distinct regions and structurally diverse habitats, implying that 'everything is everywhere'. With the discovery of lateral budding in 'Kolteria novifilia' and the capability of the members of the Saltatorellus clade to divide by binary fission as well as budding, we identified previously unknown modes of bacterial cell division. Alongside unobserved aspects of cell signalling and small-molecule production, our findings demonstrate that exploration beyond the well-established model organisms has the potential to increase our knowledge of bacterial diversity. We illustrate how 'microbial dark matter' can be accessed by cultivation techniques, expanding the organismic background for small-molecule research and drug-target detection.

Details

OriginalspracheEnglisch
Seiten (von - bis)126-140
Seitenumfang15
FachzeitschriftNature microbiology
Jahrgang5
Ausgabenummer1
PublikationsstatusVeröffentlicht - 18 Nov. 2019
Peer-Review-StatusJa

Externe IDs

PubMedCentral PMC7286433
Scopus 85075401514

Schlagworte

Schlagwörter

  • Bacteria/classification, Bacterial Physiological Phenomena, Cell Division, Ecosystem, Genetic Variation, Genome, Bacterial/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Secondary Metabolism, Signal Transduction

Bibliotheksschlagworte