Content-aware image restoration: pushing the limits of fluorescence microscopy

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • Martin Weigert - , Zentrum für Systembiologie Dresden (CSBD), Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Uwe Schmidt - , Zentrum für Systembiologie Dresden (CSBD), Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Tobias Boothe - , Zentrum für Systembiologie Dresden (CSBD), Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Andreas Müller - , Molekulare Diabetologie, Medizinische Fakultät Carl Gustav Carus Dresden, Deutsches Zentrum für Diabetesforschung (DZD e.V.) (Autor:in)
  • Alexandr Dibrov - , Zentrum für Systembiologie Dresden (CSBD), Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Akanksha Jain - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Benjamin Wilhelm - , Zentrum für Systembiologie Dresden (CSBD), Universität Konstanz (Autor:in)
  • Deborah Schmidt - , Zentrum für Systembiologie Dresden (CSBD) (Autor:in)
  • Coleman Broaddus - , Zentrum für Systembiologie Dresden (CSBD), Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Siân Culley - , University College London, The Francis Crick Institute (Autor:in)
  • Mauricio Rocha-Martins - , Zentrum für Systembiologie Dresden (CSBD), Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Fabián Segovia-Miranda - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Caren Norden - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Ricardo Henriques - , University College London, The Francis Crick Institute (Autor:in)
  • Marino Zerial - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Michele Solimena - , Molekulare Diabetologie, Max Planck Institute of Molecular Cell Biology and Genetics, Medizinische Fakultät Carl Gustav Carus Dresden, Deutsches Zentrum für Diabetesforschung (DZD e.V.) (Autor:in)
  • Jochen Rink - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Pavel Tomancak - , Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Loic Royer - , Zentrum für Systembiologie Dresden (CSBD), Max Planck Institute of Molecular Cell Biology and Genetics, Chan Zuckerberg Biohub (Autor:in)
  • Florian Jug - , Zentrum für Systembiologie Dresden (CSBD), Max Planck Institute of Molecular Cell Biology and Genetics (Autor:in)
  • Eugene W. Myers - , Zentrum für Systembiologie Dresden (CSBD), Max Planck Institute of Molecular Cell Biology and Genetics, Technische Universität Dresden (Autor:in)

Abstract

Fluorescence microscopy is a key driver of discoveries in the life sciences, with observable phenomena being limited by the optics of the microscope, the chemistry of the fluorophores, and the maximum photon exposure tolerated by the sample. These limits necessitate trade-offs between imaging speed, spatial resolution, light exposure, and imaging depth. In this work we show how content-aware image restoration based on deep learning extends the range of biological phenomena observable by microscopy. We demonstrate on eight concrete examples how microscopy images can be restored even if 60-fold fewer photons are used during acquisition, how near isotropic resolution can be achieved with up to tenfold under-sampling along the axial direction, and how tubular and granular structures smaller than the diffraction limit can be resolved at 20-times-higher frame rates compared to state-of-the-art methods. All developed image restoration methods are freely available as open source software in Python, FIJI, and KNIME.

Details

OriginalspracheEnglisch
Seiten (von - bis)1090-1097
Seitenumfang8
FachzeitschriftNature methods
Jahrgang15
Ausgabenummer12
PublikationsstatusVeröffentlicht - 1 Dez. 2018
Peer-Review-StatusJa

Externe IDs

PubMed 30478326

Schlagworte