Connectedness matters: construction and exact random sampling of connected networks

Publikation: Beitrag in FachzeitschriftForschungsartikelBeigetragenBegutachtung

Beitragende

  • Sz Horvát - , Max Planck Institute of Molecular Cell Biology and Genetics, Zentrum für Systembiologie Dresden (CSBD), Max-Planck-Institute for the Physics of Complex Systems (Autor:in)
  • Carl D. Modes - , Max Planck Institute of Molecular Cell Biology and Genetics, Zentrum für Systembiologie Dresden (CSBD), Technische Universität Dresden, Exzellenzcluster PoL: Physik des Lebens (Autor:in)

Abstract

We describe a new method for the random sampling of connected networks with a specified degree sequence. We consider both the case of simple graphs and that of loopless multigraphs. The constraints of fixed degrees and of connectedness are two of the most commonly needed ones when constructing null models for the practical analysis of physical or biological networks. Yet handling these constraints, let alone combining them, is non-trivial. Our method builds on a recently introduced novel sampling approach that constructs graphs with given degrees independently (unlike edge-switching Markov chain Monte Carlo methods) and efficiently (unlike the configuration model), and extends it to incorporate the constraint of connectedness. Additionally, we present a simple and elegant algorithm for directly constructing a single connected realization of a degree sequence, either as a simple graph or a multigraph. Finally, we demonstrate our sampling method on a realistic scale-free example, as well as on degree sequences of connected real-world networks, and show that enforcing connectedness can significantly alter the properties of sampled networks.

Details

OriginalspracheEnglisch
Aufsatznummer015008
FachzeitschriftJournal of Physics: Complexity
Jahrgang2
Ausgabenummer1
PublikationsstatusVeröffentlicht - März 2021
Peer-Review-StatusJa

Schlagworte

Schlagwörter

  • Algorithms, Connected graphs, Degree sequence, Networks, Null models, Random graphs, Random sampling