The status of Niviventer confucianus and N. fulvescens as separate species or color variants of the same species has been debated for a long time. A detailed study of 157 specimens (119 N. confucianus and 34 N. fulvescens) collected 1937/1938 in Fukien, South East China, was conducted in order to shed more light on the taxonomic status of the two taxa. Because all measured skull parameters strongly correlate with age, age classes were formed on the basis of tooth wear. Student's t-tests for differences between N. confucianus and N. fulvescens were performed using age-independent unstandardized residuals. These were derived from linear regressions of each measured parameter against age class. Statistical significant differences between the taxa were revealed in residuals based on interorbital constriction, length and width of incisive foramen, length of bulla, diastema, width of rostrum and width of nasal. Discriminant analysis using the unstandardized residuals shows a clear separation between N. confucianus and N. fulvescens on the basis of the first discriminant function mainly influenced by interorbital width and length of incisive foramen. Additionally, qualitative morphological differences in the skulls are described, concerning the anterior rim of the zygomatic plate, the mandible and the maxillary teeth. The differences in outer morphology including the brighter, more reddish and more shiny pelage of N. fulvescens, white tail tip occurring in N. confucianus only, the relatively longer tail in N. confucianus, and the higher frequency of a fulvous marking on the chest in N. confucianus are supported.